Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014647.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq3283 105 1e-19 seq5745 102 1e-18 seq77518 95.1 2e-16 seq3439 91.5 3e-15 seq22495 86.0 1e-13 seq490 82.4 1e-12 seq35612 77.0 6e-11 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 178/253 (70%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 1682 GGCCCAGGATTGCATAGGAAGATTGTCGGTATGCCGCCTTTAATTTGAACTGGCTTCCCG 1741 || ||||||||||| || | ||| | || || |||||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1742 TACTTGGTATTGGATTGCCAGTCCCTTTGGGTCCCCATAAACTCTTTAAAGTGCT----- 1796 ||||| | ||||| ||||| | | || | || | |||| || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1797 -TGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCACGCGTCGTTACTATAGACT 1855 | | | | |||| ||||| || |||||||||||||| || || || || | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTA-CGT 2105 Query 1856 TTTGGGCTT-AGATCCA-AATGCCCACATAGGTAATTATGTGGGCCTAAAGACCTAGCCC 1913 ||||| || | ||||| || |||| || ||| || ||||||||||| || | ||||| Sbjct 2104 TTTGGAATTAAAATCCATAAATCCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1914 ACATTGTCTTCCC 1926 | ||| ||||| Sbjct 2045 ATGCTGTTTTCCC 2033 >seq5745 Length=45059 Score = 102 bits (112), Expect = 1e-18 Identities = 179/251 (71%), Gaps = 10/251 (4%) Strand=Plus/Plus Query 1684 CCCAGGATTGCATAGGAAGATTGTCGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTA 1743 |||||||||||| | | ||| || || || ||||||||||||||||| || ||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1744 CTTGGTATTGGATTGCCAGTCCCTTTGGGTCCCCATAAACTCTT--TAAAG-TGCTTGAG 1800 ||| | ||| || ||||| | | ||| | || || |||| || ||| | | || | Sbjct 43600 CTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1801 GAAGT--GC-GGATCTACGTCATCAATGACGTTATACCACGCGTCGTTACTATAGACTTT 1857 || | || ||| | ||||||||||||||||||||| |||||||| | || ||| Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT-CGATTATGTTT 43718 Query 1858 TGGGCTT-AGATCCA-AATGCCCACATAGGTAATTATGTGGGCCTAAAGACCTAGCCCAC 1915 | | || | ||||| || ||||| || ||||||||||| || || || | ||||| Sbjct 43719 TCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCAA 43777 Query 1916 ATTGTCTTCCC 1926 | ||| || || Sbjct 43778 ACTGTTTTACC 43788 >seq77518 Length=14724 Score = 95.1 bits (104), Expect = 2e-16 Identities = 178/253 (70%), Gaps = 14/253 (6%) Strand=Plus/Minus Query 1684 CCCAGGATTGCATAGGAAGATTGTCGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTA 1743 |||||||||||| || | ||| || || ||||||||||||||||||| || |||| Sbjct 2401 CCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTA 2342 Query 1744 CTTGGTATTGGATTGCCAGTCCCTTTGGGTCCCCATAAACTCTTTAAAGTGC---TTGAG 1800 ||| | ||| || || |||| | ||| | || | |||| || | | ||| || | Sbjct 2341 CTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1801 GAAGT--GC-GGATCTACGTCATCAATGACGTTATACCACGCGTCGTT--ACTATAGACT 1855 || | || ||| || ||||||||||||||||||||||||||||| | ||| | Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTAT---GT 2225 Query 1856 TTTGGGCTT-AGATCCA-AATGCCCACATAGGTAATTATGTGGGCCTAAAGACCTAGCCC 1913 ||| || | ||||| || ||||| || ||||||||||| || || | | |||| Sbjct 2224 TTTCAAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCC 2166 Query 1914 ACATTGTCTTCCC 1926 | | ||| || || Sbjct 2165 AAACTGTTTTACC 2153 >seq3439 Length=62978 Score = 91.5 bits (100), Expect = 3e-15 Identities = 175/253 (69%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 1682 GGCCCAGGATTGCATAGGAAGATTGTCGGTATGCCGCCTTTAATTTGAACTGGCTTCCCG 1741 || ||| ||||||| || | ||| | || || |||||||||||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1742 TACTTGGTATTGGATTGCCAGTCCCTTTGGGTCCCCATAAACTCTTTAAAGTGCT----- 1796 ||||| | |||| ||||| | | || | || | |||| || | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1797 -TGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCACGCGTCGTTACTATAGACT 1855 | | | | |||| || ||||| |||||||||||||| || || || || | Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTA-CGT 785 Query 1856 TTTGGGCTT-AGATCCA-AATGCCCACATAGGTAATTATGTGGGCCTAAAGACCTAGCCC 1913 ||||| || | ||||| || |||| || ||| || ||||||||||| || | ||||| Sbjct 784 TTTGGAATTAAAATCCATAAATCCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 726 Query 1914 ACATTGTCTTCCC 1926 | ||| ||||| Sbjct 725 ATGCTGTTTTCCC 713 >seq22495 Length=567 Score = 86.0 bits (94), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 1682 GGCCCAGGATTGCATAGGAAGATTGTCGGTATGCCGCCTTTAATTTGAACTGGCTTCCCG 1741 || ||||||||||| || | ||| | | || |||| ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1742 TACTTGGTATTGGATTGCCAGTCCCTTTGGGTCCCCATAAACTCTTTAAAGTGCT----- 1796 ||||| | ||||| ||||||| | || | || | |||| || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1797 -TGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCACGCGTCGTTACTATAGACT 1855 | | | | |||| | |||||| |||||||||||||| || || || || | Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTA-CGT 192 Query 1856 TTTGGGCTT-AGATCCAAATGCCCACATAGGTAATTATGTGGGCCTAAAGA 1905 ||||| || | ||||||| || || ||| || ||||||||||| || Sbjct 191 TTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq490 Length=137872 Score = 82.4 bits (90), Expect = 1e-12 Identities = 171/248 (69%), Gaps = 14/248 (6%) Strand=Plus/Minus Query 1690 ATTGCATAGGAAGATTGTCGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGT 1749 ||||||||||| |||| ||||| || ||||||||||| | |||||| | || || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1750 ATTGGATTGCCAGTCCCTTTG---GGTCCCCATAAACTCTTTAAAGTGCTT----GAG-G 1801 || | ||||||| || || || ||| |||| ||| | | ||||| || | Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1802 AAGTGC-GGATCTACGTCATCAATGACGTTATACCACGCGTCGTTACTATAGACTTTTGG 1860 | ||| ||| |||||||| |||||||||||||| | || || | | ||| Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCT 70442 Query 1861 GCTTAGATCCA-AATGCCCACATAGGTAATTATGTGGGCCTAAAGACCTAGCCCACATTG 1919 | | ||||| || ||||| | | |||||||||||| || ||| |||||||| | Sbjct 70441 ATTGAAATCCATAACGCCCATA-AAGTAATTATGTGGACCCAAACTTCTAGCCCATTCAG 70383 Query 1920 TCTTCCCA 1927 |||||||| Sbjct 70382 TCTTCCCA 70375 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1682 GGCCCAGGATTGCATAGGAAGATTGTCGGTATGCCGCCTTTAATTTGAACTGGCTTCCCG 1741 || ||||||||||| || | ||| | || ||||||||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1742 TACTTGGTATTGGATTGCCA 1761 ||||| | |||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8695721652800