Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014707.1 Length=2736 Score E Sequences producing significant alignments: (Bits) Value seq3283 113 8e-22 seq22495 107 3e-20 seq3439 107 3e-20 seq33 100 5e-18 seq5745 91.5 3e-15 seq953 87.8 3e-14 seq54129 84.2 4e-13 seq4104 80.6 5e-12 seq35612 77.0 6e-11 seq20728 77.0 6e-11 >seq3283 Length=49157 Score = 113 bits (124), Expect = 8e-22 Identities = 168/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1668 GGCCCAGAATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGTTTCCCG 1727 || |||| |||||| || | |||| | ||||| || |||||||||||||||||||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1728 TACTTGGTGTTACTTTGCCAGTCCCTCTGGACCCCCATGAACTCTTTAAAATGCT----- 1782 ||||| | || ||||| | | ||| | || | ||||| || | |||||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1783 -TTAGGTAGTGGGGGTCTACGTCATCAATGATGTTATACCATGCATCATTTGAATATATC 1841 ||| || | || ||||| || |||| ||||||||||||||||||||| || | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1842 TTGCGACTCAGATCTAAATGTCCACACAGGTAATTGTGTGGTCCCAAAGACCTGGCCCA 1900 ||| | | | ||| | | ||| | ||| |||||||| || || || | ||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq22495 Length=567 Score = 107 bits (118), Expect = 3e-20 Identities = 170/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 1654 TATAGCAGGAATTGGGCCCAGAATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTT 1713 ||||| | ||| || |||| |||||| || | |||| | |||| || | |||||||| Sbjct 384 TATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTT 325 Query 1714 GAACTGGTTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTCTGGACCCCCATGAACTCTT 1773 |||||||||| |||||||| | || ||||||| | ||| | || | ||||| || Sbjct 324 GAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTT 265 Query 1774 TAAAATGCT------TTAGGTAGTGGGGGTCTACGTCATCAATGATGTTATACCATGCAT 1827 | |||||| ||| || | || | |||||| |||| |||||||||||||| Sbjct 264 GACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCAT 205 Query 1828 CATTTGAATATATCTTGCGACTCAGATCTAAATGTCCACACAGGTAATTGTGTGGTCCCA 1887 ||||||| || | ||| | | | ||| ||| ||| | ||| |||||||| || | Sbjct 204 CATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTA 145 Query 1888 AAGA 1891 | || Sbjct 144 ATGA 141 >seq3439 Length=62978 Score = 107 bits (118), Expect = 3e-20 Identities = 167/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1668 GGCCCAGAATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGTTTCCCG 1727 || ||| |||||| || | |||| | ||||| || |||||||||||||||||||| ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1728 TACTTGGTGTTACTTTGCCAGTCCCTCTGGACCCCCATGAACTCTTTAAAATGCT----- 1782 ||||| | ||| ||||| | | ||| | || | ||||| || | |||||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1783 -TTAGGTAGTGGGGGTCTACGTCATCAATGATGTTATACCATGCATCATTTGAATATATC 1841 ||| || | || || ||||| |||| ||||||||||||||||||||| || | Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1842 TTGCGACTCAGATCTAAATGTCCACACAGGTAATTGTGTGGTCCCAAAGACCTGGCCCA 1900 ||| | | | ||| | | ||| | ||| |||||||| || || || | ||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq33 Length=454124 Score = 100 bits (110), Expect = 5e-18 Identities = 174/249 (70%), Gaps = 12/249 (5%) Strand=Plus/Minus Query 1670 CCCAGAATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGTTTCCCGTA 1729 ||||| |||||| || | |||| ||||| || | |||||||||||||||||| ||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1730 CTTGGTGTTACTTTGCCAGTCCCTCTGGACCCCCATGAACTCTTTAAAATGCTTT----- 1784 ||| | || ||||||| | ||| || || | ||||| || | |||| ||| Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1785 --AGGTAG-TGGGGGTCTACGTCATCAATGATGTTATACCATGCATCATTTGAATATATC 1841 | || ||| || ||||||||||||| ||||||||| || || || || ||| | Sbjct 403183 TAAATAAGCTGGAGGG--ACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 403126 Query 1842 TTGCGACTCAGATCTA-AATGTCCACACAGGTAATTGTGTGGTCCCAAAGACCTGGCCCA 1900 | | ||| ||| | || | ||| | |||||| ||||| ||||| || | ||||| Sbjct 403125 CTCGAATTCAAATCCATAAAGCCCA-TTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 Query 1901 CATTGTCTT 1909 | ||| || Sbjct 403066 AACTGTTTT 403058 >seq5745 Length=45059 Score = 91.5 bits (100), Expect = 3e-15 Identities = 174/252 (69%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 1670 CCCAGAATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGTTTCCCGTA 1729 ||||| |||||| | | |||| ||||| || |||||||||||||||||||| ||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1730 CTTGGTGTTACTTTGCCAGTCCCTCTGGACCCCCATGAACTCTTTAAAATGCTTT----- 1784 ||| | || ||||| | | || | || ||||||| || | |||| ||| Sbjct 43600 CTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1785 --AGGTAG-TGGGGGTCTACGTCATCAATGATGTTATACCATGCATCATTTGAATATATC 1841 | || ||| || | ||||||||||| |||||||||||| || || || ||| | Sbjct 43660 TAAATAAGCTGGAGGGAT--GTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1842 TTGCGACTCAGATCTA-AATGTCCACACAGGTAATTGTGTGGTCCCAAAGACCTGGCCCA 1900 || | ||| ||| | || | ||| | ||||| ||||| ||||| || | ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 Query 1901 CATTGTCTTGCC 1912 | ||| || || Sbjct 43777 AACTGTTTTACC 43788 >seq953 Length=224861 Score = 87.8 bits (96), Expect = 3e-14 Identities = 133/190 (70%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 1654 TATAGCAGGAATTGGGCCCAGAATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTT 1713 ||||| | ||| || |||| |||||| | | |||| | ||||| || |||||||||| Sbjct 1826 TATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTT 1885 Query 1714 GAACTGGTTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTCTGGACCCCCATGAACTCTT 1773 ||| || ||| |||||||| | || ||||| | | ||| || || | ||||| || Sbjct 1886 GAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTT 1945 Query 1774 TAAAATGCT------TTAGGTAGTGGGGGTCTACGTCATCAATGATGTTATACCATGCAT 1827 | ||| || ||| || | || ||||| || || | |||||||||||||| Sbjct 1946 GATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCAT 2005 Query 1828 CATTTGAATA 1837 ||||||| || Sbjct 2006 CATTTGAGTA 2015 >seq54129 Length=2260 Score = 84.2 bits (92), Expect = 4e-13 Identities = 128/183 (70%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 1668 GGCCCAGAATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGTTTCCCG 1727 || |||| |||||| || | |||| | ||||| || ||||||||||||| |||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1728 TACTTGGTGTTACTTTGCCAGTCCCTCTGGACCCCCATGAACTCTTTAAAATGCT----- 1782 ||||| | || || |||| ||| | || | ||||| || |||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1783 -TTAGGTAGTGGGGGTCTACGTCATCAATGATGTTATACCATGCATCATTTGAATATATC 1841 ||| || | || || || || |||| |||||||||| |||||||||| ||| | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTT 2081 Query 1842 TTG 1844 ||| Sbjct 2080 TTG 2078 >seq4104 Length=64936 Score = 80.6 bits (88), Expect = 5e-12 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 1654 TATAGCAGGAATTGGGCCCAGAATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTT 1713 ||||| | ||| ||| |||| |||||| || | |||| | ||||| || |||||||||| Sbjct 20844 TATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTT 20785 Query 1714 GAACTGGTTTCCCGTACTT 1732 |||||||||| |||||||| Sbjct 20784 GAACTGGTTTTCCGTACTT 20766 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 1654 TATAGCAGGAATTGGGCCCAGAATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTT 1713 ||||| | ||| || |||| |||||| || | |||| | ||||| || |||||||||| Sbjct 1493 TATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTT 1552 Query 1714 GAACTGGTTTCCCGTACTTGGTGTT 1738 |||||||||| |||||||| | ||| Sbjct 1553 GAACTGGTTTTCCGTACTTTGCGTT 1577 >seq20728 Length=3653 Score = 77.0 bits (84), Expect = 6e-11 Identities = 107/149 (72%), Gaps = 7/149 (5%) Strand=Plus/Plus Query 1695 GGAATACCTCCTTTAATTTGAACTGGTTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTC 1754 ||||| || ||||||||||||| |||||| |||||||| | || |||| || | | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1755 TGGACCCCCATGAACTCTTTAAAATGCT------TTAGGTAGTGGGGGTCTACGTCATCA 1808 || | || | ||||| || | |||||| ||| || | || |||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1809 ATGATGTTATACCATGCATCATTTGAATA 1837 |||| |||||| |||||||||||||| || Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTA 1589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8638176435980