Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014745.1 Length=2764 Score E Sequences producing significant alignments: (Bits) Value seq3439 107 3e-20 seq3283 102 1e-18 seq22495 98.7 2e-17 seq35612 87.8 3e-14 seq5745 86.0 1e-13 seq54129 82.4 1e-12 seq4104 78.8 2e-11 seq490 78.8 2e-11 >seq3439 Length=62978 Score = 107 bits (118), Expect = 3e-20 Identities = 135/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1698 TTTATAGGATGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAAT 1757 |||||||||| | | || || ||||||| || | ||| |||| || || |||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1758 TTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCACCCATGAACTC 1817 ||||||||| || ||||| |||| |||| ||||| | ||||| || | ||||| Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1818 CTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACGTTATACCATGC 1871 | | | || ||| | ||||| ||| |||||||| ||||||||||||||||| Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1872 GTCATT 1877 ||||| Sbjct 799 ATCATT 794 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1698 TTTATAGGATGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAAT 1757 |||||||||| || || || |||||||| || | ||| |||| || || |||||||| Sbjct 2299 TTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 2240 Query 1758 TTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCACCCATGAACTC 1817 ||||||||| |||||||| |||| ||| ||||| | ||||| || | ||||| Sbjct 2239 TTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTG 2180 Query 1818 CTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACGTTATACCATGC 1871 | | | || ||| | ||||| ||| || || || ||||||||||||||||| Sbjct 2179 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGC 2120 Query 1872 GTCATT 1877 ||||| Sbjct 2119 ATCATT 2114 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 133/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1698 TTTATAGGATGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAAT 1757 |||||||||| ||| || || |||||||| || | ||| || | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1758 TTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCACCCATGAACTC 1817 ||||||||| || ||||| |||| ||| ||||||| ||||| || | ||||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1818 CTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACGTTATACCATGC 1871 | | | || ||| | ||||| ||| | ||||| ||||||||||||||||| Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1872 GTCATT 1877 ||||| Sbjct 206 ATCATT 201 >seq35612 Length=1588 Score = 87.8 bits (96), Expect = 3e-14 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1698 TTTATAGGATGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAAT 1757 |||||||||| ||| || || |||||||| || | ||| |||| ||||| |||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1758 TTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCA 1793 ||||||||| || ||||| |||| |||| ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq5745 Length=45059 Score = 86.0 bits (94), Expect = 1e-13 Identities = 133/190 (70%), Gaps = 9/190 (5%) Strand=Plus/Plus Query 1697 CTTTATAGGATGAATTTGGACCT---GGATTGCAGAGGAAGATTGTTGGGATGCCCCCTT 1753 ||||||| ||| ||| |||||| |||||||| | | ||| ||| || || |||| Sbjct 43518 CTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACCTT 43577 Query 1754 TAATTTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCACCCATGA 1813 ||||||||||||| || ||||| |||| || ||||| | |||||| || |||| Sbjct 43578 TAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGA 43637 Query 1814 ACTCCTTAAAGTGTTTC------AGATAATGCGGGTCAACATCATCTATGACGTTATACC 1867 ||| | | | ||||| | |||| || | ||||| ||||||||||||| Sbjct 43638 ACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTATACC 43697 Query 1868 ATGCGTCATT 1877 ||||||| || Sbjct 43698 ATGCGTCGTT 43707 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1714 GGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGCTTCCCG 1773 || || |||||||| || | ||| |||| || || ||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1774 TATTTTGTGTTGCTTTGCCAGTCCTTTTGTGCACCCATGAACTCCT--TAAAG--TGTT- 1828 || |||| ||| || |||| | ||||| || | ||||| | ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1829 -TCAGATAATGCGGGTCAACATCATCTATGACGTTATACCATGCGTCATT 1877 | | ||||| ||| ||||| || ||||||||||||||| | ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq4104 Length=64936 Score = 78.8 bits (86), Expect = 2e-11 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 1698 TTTATAGGATGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAAT 1757 |||||||||| ||| || || |||||||| || | ||| |||| || || |||||||| Sbjct 20846 TTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 20787 Query 1758 TTGAACTGGCTTCCCGTATTTTG 1780 ||||||||| || ||||| |||| Sbjct 20786 TTGAACTGGTTTTCCGTACTTTG 20764 >seq490 Length=137872 Score = 78.8 bits (86), Expect = 2e-11 Identities = 168/244 (69%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 1722 ATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGCTTCCCGTATTTTGT 1781 |||||| |||| |||| ||| || || ||||||||||| | |||||| | ||||||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1782 GTTGCTTTGCCAGTCCTTTTGTGCACCCATGAACTCCTT--AAAG--TGTTTCAGATA-A 1836 | ||||||| | | || || || | |||| | || | | || |||| | | Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1837 TGC-GGGTCAACATCATCTATGACGTTATACCATGCGTCATTACTGAACACCTTTGGGCT 1895 ||| || || |||||||||||||||||||||| ||||| || |||| | Sbjct 70498 TGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCTATT 70439 Query 1896 CAGATCAAGATGGCCGCACAGA-TAATTATGAGGCCCAAGACTTCTGGCCCATACGGTCT 1954 | ||| | | ||| || | | |||||||| || || | |||||| |||||| | |||| Sbjct 70438 GAAATCCATAACGCC-CATAAAGTAATTATGTGGACCCAAACTTCTAGCCCATTCAGTCT 70380 Query 1955 TTCC 1958 | || Sbjct 70379 TCCC 70376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8727691217700