Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014845.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq5745 116 6e-23 seq33 113 8e-22 seq77518 107 3e-20 seq3283 102 1e-18 seq3439 96.9 6e-17 seq1993 96.9 6e-17 seq22495 82.4 1e-12 seq35612 80.6 5e-12 seq4104 80.6 5e-12 >seq5745 Length=45059 Score = 116 bits (128), Expect = 6e-23 Identities = 176/246 (72%), Gaps = 11/246 (4%) Strand=Plus/Plus Query 1600 GCATTCTTTAAAGCCCAGGATTT-TAATGCTGAGTTCTTATCCTCGTCTAAGAACTCTTT 1658 ||||| | ||||| | | ||||| |||| ||| || ||| ||||||||| |||| Sbjct 43463 GCATTTTGTAAAGTCAACGATTTCTAATT-TGAATTTGAATCTATATCTAAGAACGCTTT 43521 Query 1659 ATAGCTTGCATTGGG---CCCTGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAAT 1715 ||| | || || ||| |||||||| | | ||| ||| || || |||||||| Sbjct 43522 ATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAAT 43581 Query 1716 TTGAACTGGCTTCCCGTATTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTC 1775 ||||||||| || ||||| |||| ||||| ||||| | | ||| || || ||||| | Sbjct 43582 TTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTG 43641 Query 1776 TTTAAAGTGTTTT---AGGAAGT---GTGGATCGACGTCATCAATGACGTTATACCAAGC 1829 || | | |||||| | || | |||| || ||||||||||||||||||||| || Sbjct 43642 TTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGC 43701 Query 1830 GTCGTT 1835 |||||| Sbjct 43702 GTCGTT 43707 >seq33 Length=454124 Score = 113 bits (124), Expect = 8e-22 Identities = 179/251 (71%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 1593 GAATGTTGCATTCTTTAAAGCCCAGGATTTTAATGCTGAGTTCTTATCCTCGTCTAAGAA 1652 |||| |||||||| ||||| ||| ||||| | ||| || ||| || ||||| Sbjct 403386 GAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTATATCGAAGAA 403327 Query 1653 CTCTTTATA-GCTTGCATTGGGCCCT-GGATTGCAGAGGAAGATTGTTGGTATGCCGCCT 1710 | ||||||| | | ||| ||| |||||||| || | ||| ||| || |||| | Sbjct 403326 CGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTT 403267 Query 1711 TTAATTTGAACTGGCTTCCCGTATTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATG 1770 |||||||||||||| || ||||| |||| ||||| ||||||| | || | || | | Sbjct 403266 TTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACG 403207 Query 1771 AATTCTT--TAAAG-TGTTTTAGGAAGT---GTGGATCGACGTCATCAATGACGTTATAC 1824 || | || ||| | | ||| | || | |||| |||||||||||||||||||||| Sbjct 403206 AACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATAC 403147 Query 1825 CAAGCGTCGTT 1835 || |||||||| Sbjct 403146 CACGCGTCGTT 403136 >seq77518 Length=14724 Score = 107 bits (118), Expect = 3e-20 Identities = 177/252 (70%), Gaps = 9/252 (4%) Strand=Plus/Minus Query 1593 GAATGTTGCATTCTTTAAAGCCCAGGATTTTAATGCTGAGTTCTTATCCTCGTCTAAGAA 1652 |||| |||||| | ||||| ||| |||||| | ||| || ||| || ||||| Sbjct 2485 GAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAAATCCAAGAA 2426 Query 1653 CTCTTTATAGCTTGCATTGGG---CCCTGGATTGCAGAGGAAGATTGTTGGTATGCCGCC 1709 ||||||| | || || ||| |||||||| || | ||| ||| || ||||| Sbjct 2425 TGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCC 2366 Query 1710 TTTAATTTGAACTGGCTTCCCGTATTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCAT 1769 |||||||||||||| || |||| |||| ||||| || |||| | ||| || || | Sbjct 2365 TTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTAC 2306 Query 1770 GAATTCTT--TAAAG-TGTTTTAGGAAGT---GTGGATCGACGTCATCAATGACGTTATA 1823 ||| | || ||| | | ||| | || | |||| ||| ||||||||||||||||| Sbjct 2305 GAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATA 2246 Query 1824 CCAAGCGTCGTT 1835 ||| |||||||| Sbjct 2245 CCACGCGTCGTT 2234 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 189/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1645 TCTAAGAACTCTTTATAGCTTGCATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATG 1704 || |||||| ||||||| | || || || |||||||| || | ||| |||| || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2251 Query 1705 CCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTTGATTGCCAGTCCCTTTGGGCC 1764 |||||||||||||||||||| |||||||| |||| || | ||||| | | || || Sbjct 2250 CCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2191 Query 1765 CCCATGAATTCTTTAAAGTGTT------TTAGGAAGTGTGGATCGACGTCATCAATGACG 1818 || | ||| | || | | || | ||| | | ||| |||||| || |||||| Sbjct 2190 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACG 2131 Query 1819 TTATACCAAGCGTCGTTACTGTACACCTTTGGGCTAAGGTCCAGATTCCCGCATAAATAG 1878 |||||||| || || || |||| || | ||| |||| | || || ||| Sbjct 2130 TTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAG 2071 Query 1879 TTATGTGGGCTTAAAGACCTAGCCCACATTGTTTTTCC 1916 || ||||||| ||| || | |||||| |||||| || Sbjct 2070 TTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2033 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 188/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1645 TCTAAGAACTCTTTATAGCTTGCATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATG 1704 ||||||||| ||||||| | | || || ||||||| || | ||| |||| || Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1705 CCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTTGATTGCCAGTCCCTTTGGGCC 1764 |||||||||||||||||||| || ||||| |||| ||| | ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1765 CCCATGAATTCTTTAAAGTGTT------TTAGGAAGTGTGGATCGACGTCATCAATGACG 1818 || | ||| | || | | || | ||| | | ||| ||| ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1819 TTATACCAAGCGTCGTTACTGTACACCTTTGGGCTAAGGTCCAGATTCCCGCATAAATAG 1878 |||||||| || || || |||| || | ||| |||| | || || ||| Sbjct 810 TTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAG 751 Query 1879 TTATGTGGGCTTAAAGACCTAGCCCACATTGTTTTTCC 1916 || ||||||| ||| || | |||||| |||||| || Sbjct 750 TTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 713 >seq1993 Length=81530 Score = 96.9 bits (106), Expect = 6e-17 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1674 CCCTGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTA 1733 ||| |||||||| || | ||| ||| || ||| |||||||||||||||| || ||||| Sbjct 74404 CCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTA 74345 Query 1734 TTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTT--TAAAG-TGTTTTAG 1790 |||| ||||| ||||| | | ||| || | | ||| | || ||| | | ||| | Sbjct 74344 CTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAAT 74285 Query 1791 GAAGT---GTGGATCGACGTCATCAATGACGTTATACCAAGCGTCGTT 1835 || | |||| |||||||||||||||||||||||| |||| ||| Sbjct 74284 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq22495 Length=567 Score = 82.4 bits (90), Expect = 1e-12 Identities = 136/197 (69%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1645 TCTAAGAACTCTTTATAGCTTGCATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATG 1704 |||||||| ||||||| | || || || |||||||| || | ||| || | || Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1705 CCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTTGATTGCCAGTCCCTTTGGGCC 1764 |||| ||||||||||||||| || ||||| |||| || | ||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1765 CCCATGAATTCTTTAAAGTGTT------TTAGGAAGTGTGGATCGACGTCATCAATGACG 1818 || | ||| | || | | || | ||| | | ||| || |||||| |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1819 TTATACCAAGCGTCGTT 1835 |||||||| || || || Sbjct 217 TTATACCATGCATCATT 201 >seq35612 Length=1588 Score = 80.6 bits (88), Expect = 5e-12 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1645 TCTAAGAACTCTTTATAGCTTGCATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATG 1704 || ||||| ||||||| | || || || |||||||| || | ||| |||| ||| Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1705 CCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTTGATTGCCA 1751 |||||||||||||||||||| || ||||| |||| ||| | ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 80.6 bits (88), Expect = 5e-12 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 1645 TCTAAGAACTCTTTATAGCTTGCATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATG 1704 || |||||| ||||||| | || ||| || |||||||| || | ||| |||| || Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1705 CCGCCTTTAATTTGAACTGGCTTCCCGTATTTTG 1738 |||||||||||||||||||| || ||||| |||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 20764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8647767305450