Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014894.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq33 105 1e-19 seq5745 100 5e-18 seq77518 95.1 2e-16 seq35612 95.1 2e-16 seq3439 93.3 7e-16 seq1993 91.5 3e-15 seq22495 87.8 3e-14 seq3283 87.8 3e-14 seq30129 84.2 4e-13 seq4104 82.4 1e-12 seq54129 80.6 5e-12 seq442 80.6 5e-12 seq3059 78.8 2e-11 >seq33 Length=454124 Score = 105 bits (116), Expect = 1e-19 Identities = 145/199 (73%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 1627 TCTAAGAACTCTTTATAA--CTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTTGGTA 1684 || |||||| |||||||| | || | | ||||||||||| || | ||| ||| | Sbjct 403334 TCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAA 403275 Query 1685 TGCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGG 1744 | |||| ||||||||||||||| ||||||||||||| || || ||||||| | || Sbjct 403274 TCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTA 403215 Query 1745 CCCCCATGAACTCTT--TAAAG-TGTTTGAGGAAGT---GGGGATCTACGTCATCAATGA 1798 | || | ||||| || ||| | | ||| | || | ||| ||||||||||||| Sbjct 403214 CGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGA 403155 Query 1799 CGTTATACCAGGCCTCGTT 1817 |||||||||| || ||||| Sbjct 403154 CGTTATACCACGCGTCGTT 403136 >seq5745 Length=45059 Score = 100 bits (110), Expect = 5e-18 Identities = 146/204 (72%), Gaps = 17/204 (8%) Strand=Plus/Plus Query 1627 TCTAAGAACTCTTTATAACTGCTGTTGGGACC---AGGATTGCAGAGGAAGATTGTTGGT 1683 ||||||||| |||||||| | ||||| ||||||||| | | ||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1684 ATGCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGG 1743 || || ||||||||||||||||| || |||||||||| || || ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1744 GCCCCCATGAACTCTTTAAAGTGTTTG-------AGGAAG-TGG--GGATCTACGTCATC 1793 || || ||||||| || | | ||||| | ||| ||| |||| |||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGAT----GTCATC 43683 Query 1794 AATGACGTTATACCAGGCCTCGTT 1817 ||||||||||||||| || ||||| Sbjct 43684 AATGACGTTATACCATGCGTCGTT 43707 >seq77518 Length=14724 Score = 95.1 bits (104), Expect = 2e-16 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1657 CCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTTCCGTAC 1716 ||||||||||| || | ||| ||| || ||||||||||||||||||| ||| ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1717 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1773 |||| || || || |||| | ||| || || | ||||| || ||| | | ||| | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1774 AAGT---GGGGATCTACGTCATCAATGACGTTATACCAGGCCTCGTT 1817 || | ||| || |||||||||||||||||||| || ||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq35612 Length=1588 Score = 95.1 bits (104), Expect = 2e-16 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1654 GGACCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTTCCG 1713 || ||||||||||| || | ||| |||| ||||||||||||||||||||||| |||||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1714 TACTTTGTGTTGGATTGCCA 1733 ||||||| ||||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq3439 Length=62978 Score = 93.3 bits (102), Expect = 7e-16 Identities = 167/241 (69%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 1654 GGACCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTTCCG 1713 || ||| ||||||| || | ||| |||| || |||||||||||||||||||| |||||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1714 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1768 ||||||| ||||| ||||| | | || || || | ||||| || | | || | Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1769 -TGAGGAAGTGGGGATCTACGTCATCAATGACGTTATACCAGGCCTCGTTACTGTAGATC 1827 | | | | ||| || ||||| |||||||||||||| || || || ||| | Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1828 TTTGGACTAAGGTC--TAGATGCCCACACAAATAGTTATGTGGACCCAGTGATCTAGCCC 1885 || | | ||| || || || |||| | ||||| ||||| || | ||| | ||||| Sbjct 783 TTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 726 Query 1886 A 1886 | Sbjct 725 A 725 >seq1993 Length=81530 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1657 CCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTTCCGTAC 1716 ||||||||||| || | ||| ||| || ||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1717 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGG 1773 |||| || || ||||| | | ||| || | | ||||| || ||| | | ||| | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1774 AAGT---GGGGATCTACGTCATCAATGACGTTATACCAGGCCTCGTT 1817 || | ||| ||||||||||||||||||||||| || | ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq22495 Length=567 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1654 GGACCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTTCCG 1713 || ||||||||||| || | ||| || | || |||| ||||||||||||||| |||||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1714 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1768 ||||||| |||| ||||||| | || || || | ||||| || | | || | Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1769 -TGAGGAAGTGGGGATCTACGTCATCAATGACGTTATACCAGGCCTCGTT 1817 | | | | ||| | |||||| |||||||||||||| || || || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq3283 Length=49157 Score = 87.8 bits (96), Expect = 3e-14 Identities = 166/241 (69%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 1654 GGACCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTTCCG 1713 || ||||||||||| || | ||| |||| || |||||||||||||||||||| || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1714 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1768 ||||||| |||| ||||| | | || || || | ||||| || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1769 -TGAGGAAGTGGGGATCTACGTCATCAATGACGTTATACCAGGCCTCGTTACTGTAGATC 1827 | | | | ||| ||||| || |||||||||||||| || || || ||| | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1828 TTTGGACTAAGGTC--TAGATGCCCACACAAATAGTTATGTGGACCCAGTGATCTAGCCC 1885 || | | ||| || || || |||| | ||||| ||||| || | ||| | ||||| Sbjct 2103 TTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1886 A 1886 | Sbjct 2045 A 2045 >seq30129 Length=3650 Score = 84.2 bits (92), Expect = 4e-13 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 1654 GGACCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTTCCG 1713 || ||||||||||| || | ||| |||| || |||||||||||||||||| | |||||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1714 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT 1759 ||||||| |||| ||||| | | || || || | ||||| || Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTT 2476 >seq4104 Length=64936 Score = 82.4 bits (90), Expect = 1e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1653 GGGACCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTTCC 1712 ||| ||||||||||| || | ||| |||| || |||||||||||||||||||| ||||| Sbjct 20831 GGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCC 20772 Query 1713 GTACTTTG 1720 |||||||| Sbjct 20771 GTACTTTG 20764 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1654 GGACCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTTCCG 1713 || ||||||||||| || | ||| |||| || |||||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1714 TACTTTGTGTTGGATTGCCAGT 1735 ||||||| |||| || |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGT 2179 >seq442 Length=237535 Score = 80.6 bits (88), Expect = 5e-12 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1651 TTGGGACCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTT 1710 || || ||||||||||| || ||| |||| || |||||||||||||||||| ||| Sbjct 22775 TTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAACTGATTTT 22834 Query 1711 CCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT 1759 |||||||||| |||| ||| ||| | ||| || || | ||||| || Sbjct 22835 CCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTT 22883 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 1654 GGACCAGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTTCCG 1713 || ||||||||||| || | ||| |||| || |||||||||||||||| ||| |||||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1714 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT 1759 || |||| |||| | ||||| | || || || | ||||| || Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTT 20314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8599812958100