Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014902.1 Length=2727 Score E Sequences producing significant alignments: (Bits) Value seq3439 102 1e-18 seq3283 96.9 6e-17 seq22495 84.2 4e-13 seq5745 82.4 1e-12 seq953 82.4 1e-12 seq20728 77.0 6e-11 seq815 77.0 6e-11 seq33 77.0 6e-11 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 170/244 (70%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 1697 TTGCAGAGAAAGATTGTGGGGATACCACCTTTAATCATTGTG--GGCTTTCCGTATTTGA 1754 ||||| || | ||| | || || || |||||||| ||| || |||||||| || Sbjct 954 TTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT--TTGAACTGGTTTTCCGTACTTTG 897 Query 1755 CGTTACTTTGCCAGTCACGTTGTGCGCCCATGAATTCTTTGAAATGTTTC------AAAT 1808 |||| ||||| | || |||||||| | ||| | || |||| ||| |||| Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1809 AATGCGGATCGACGTCATCAATGACGTTATACCATGCATCGTTGGAATACACTTTCGGAC 1868 ||| |||| ||| ||||| |||||||||||||||||||| || || ||| ||| | | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1869 TAAGGTCCAAATGGCCGCAGAGATAATTGTGCGGCCCCAATGCACGAGCCCATGTCGTCT 1928 ||| |||| | || | || ||||| || || |||| ||||||||||| || | Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTT 717 Query 1929 TCCC 1932 |||| Sbjct 716 TCCC 713 >seq3283 Length=49157 Score = 96.9 bits (106), Expect = 6e-17 Identities = 231/339 (68%), Gaps = 18/339 (5%) Strand=Plus/Minus Query 1606 GTAGAATTCCGCATTCTTGGA-AGCCCACAATTTT--AGTGATGCATTTGCTTCCTCGTC 1662 || |||||| ||||| ||| | || ||| | |||| | | ||| ||| | ||| || Sbjct 2365 GTGGAATTCTGCATT-TTGTAGAGTCCA-AGTTTTCCAAT-ATGAATTGGACTCCAAATC 2309 Query 1663 GAGGAACTCTTTATAAGAA-GATTTGTTGCCTGGGTTGCAGAGAAAGATTGTGGGGATAC 1721 | |||| |||||| || ||| | | || || ||||| || | ||| | || || | Sbjct 2308 CAAGAACGTTTTATAGGATTGATCAGGT-CCAGGATTGCAAAGTACGATACTTGGAATCC 2250 Query 1722 CACCTTTAATCATTGTG--GGCTTTCCGTATTTGACGTTACTTTGCCAGTCACGTTGTGC 1779 | |||||||| ||| || || ||||| || | || ||||| | || ||||| Sbjct 2249 CGCCTTTAAT--TTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1780 GCCCATGAATTCTTTGAAATGTTTC------AAATAATGCGGATCGACGTCATCAATGAC 1833 ||| | ||| | || |||| ||| ||||||| |||| |||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1834 GTTATACCATGCATCGTTGGAATACACTTTCGGACTAAGGTCCAAATGGCCGCAGAGATA 1893 ||||||||||||||| || || ||| ||| | | ||| |||| | || | || Sbjct 2131 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 2072 Query 1894 ATTGTGCGGCCCCAATGCACGAGCCCATGTCGTCTTCCC 1932 ||||| || || |||| ||||||||||| || ||||| Sbjct 2071 GTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2033 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 128/183 (70%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 1739 GGCTTTCCGTATTTGACGTTACTTTGCCAGTCACGTTGTGCGCCCATGAATTCTTTGAAA 1798 || |||||||| || | || ||||||| || |||||||| | ||| | || || Sbjct 319 GGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAA 260 Query 1799 TGTTTC------AAATAATGCGGATCGACGTCATCAATGACGTTATACCATGCATCGTTG 1852 || ||| ||||||| |||| || |||||| |||||||||||||||||||| || Sbjct 259 TGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTT 200 Query 1853 GAATACACTTTCGGACTAAGGTCCAAATGGCCGCAGAGATAATTGTGCGGCCCCAATGCA 1912 || ||| ||| | | ||| |||||| || | || ||||| || || |||| | Sbjct 199 GAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAA 140 Query 1913 CGA 1915 ||| Sbjct 139 CGA 137 >seq5745 Length=45059 Score = 82.4 bits (90), Expect = 1e-12 Identities = 216/323 (67%), Gaps = 15/323 (5%) Strand=Plus/Plus Query 1610 AATTCCGCATTCTTGGAAGCCCACAATTT-TAGTGATGCATTTGCTTCCTCGTCGAGGAA 1668 ||||| ||||| | ||| | || |||| || | || ||||| || || | ||| Sbjct 43457 AATTCAGCATTTTGTAAAGTCAACGATTTCTAATT-TGAATTTGAATCTATATCTAAGAA 43515 Query 1669 CTCTTTATAAGA-AGATTTGTTGCCT--GGGTTGCAGAGAAAGATTGTGGGGATACCACC 1725 | |||||||||| | || || || || ||||| | | ||| || || ||||| Sbjct 43516 CGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACC 43575 Query 1726 TTTAATCATTGTG--GGCTTTCCGTATTTGACGTTACTTTGCCAGTCACGTTGTGCGCCC 1783 |||||| ||| || || ||||| || | || ||||| | | |||||| || Sbjct 43576 TTTAAT--TTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCT 43633 Query 1784 ATGAATTCTTTGAAATGTTTC------AAATAATGCGGATCGACGTCATCAATGACGTTA 1837 ||||| | || ||||||| |||||| ||| || |||||||||||||||| Sbjct 43634 ATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTA 43693 Query 1838 TACCATGCATCGTTGGAATACACTTTCGGACTAAGGTCCAAATGGCCGCAGAGATAATTG 1897 |||||||| ||||| || || ||||| | | | |||| | ||| | |||||| Sbjct 43694 TACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTA 43753 Query 1898 TGCGGCCCCAATGCACGAGCCCA 1920 || || ||||| | ||| ||||| Sbjct 43754 TGTGGACCCAACGAACGTGCCCA 43776 >seq953 Length=224861 Score = 82.4 bits (90), Expect = 1e-12 Identities = 127/175 (73%), Gaps = 10/175 (6%) Strand=Plus/Plus Query 1805 AAATAATGCGGATCGACGTCATCAATGACGTTATACCATGCATCGTTGGAATACACTTTC 1864 ||||||| |||| |||||| || || ||||||||||||||||| || || ||| |||| Sbjct 1963 AAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTTTTC 2022 Query 1865 GGACTAAGGTCC--AAATGGCCGCA-GAGATAATTGTGCGGCCCCAATGCACGAGCCCAT 1921 | | ||| ||| |||| | || | || ||||| || || |||| |||||||||| Sbjct 2023 GAATTAAAATCCATAAAT---CTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2079 Query 1922 GTCGTCTTCCCAGTAC--GACTATCACCTTCAATGACAATGCTAATCGGTCTTTC 1974 | || ||||| | | || | | |||||||| | |||||| || || | ||| Sbjct 2080 GCTGTTTTCCCTATTCTTGA-TGT-GCCTTCAATAATAATGCTCATGGGCCGTTC 2132 >seq20728 Length=3653 Score = 77.0 bits (84), Expect = 6e-11 Identities = 158/229 (69%), Gaps = 17/229 (7%) Strand=Plus/Plus Query 1715 GGGATACCACCTTTAATCATTGTG--GGCTTTCCGTATTTGACGTTACTTTGCCAGTCAC 1772 || || || |||||||| ||| || |||||||| || | || |||| || | Sbjct 1442 GGAATCCCCCCTTTAAT--TTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGC 1498 Query 1773 GTTGTGCGCCCATGAATTCTTTGAAATGTTTC------AAATAATGCGGATCGACGTCAT 1826 | |||||||| | ||| | || |||| || ||||||| |||| |||||||| Sbjct 1499 GCTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCAT 1558 Query 1827 CAATGACGTTATACCATGCATCGTTGGAATACACTTTCGGACTAAGGTC--CAAATGGCC 1884 | ||||||||||| |||||||| || || ||| ||||| | ||| || |||| | Sbjct 1559 CGATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATAAAT---C 1615 Query 1885 GCA-GAGATAATTGTGCGGCCCCAATGCACGAGCCCATGTCGTCTTCCC 1932 || | || ||||| || | |||| ||||||||||| || ||||| Sbjct 1616 TCATTATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCC 1664 >seq815 Length=151552 Score = 77.0 bits (84), Expect = 6e-11 Identities = 168/250 (67%), Gaps = 10/250 (4%) Strand=Plus/Minus Query 1691 CCTGGGTTGCAGAGAAAGATTGTGGGGATACCACCTTTAATCATTGT--GGGCTTTCCGT 1748 || || ||||| || | || | || || || |||||||| ||| ||| ||| ||| Sbjct 85421 CCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAAT--TTGACCGGGTTTTTCGT 85364 Query 1749 ATTTGACGTTACTTTGCCAGTCACGTTGTGCGCCCATGAATTCTTTGAAATGTTTC---- 1804 | || | || | ||||| || |||||||| | ||| | || ||| ||| Sbjct 85363 ACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAAA 85304 Query 1805 --AAATAATGCGGATCGACGTCATCAATGACGTTATACCATGCATCGTTGGAATACACTT 1862 ||||||| | || |||||| || |||||||||||||||||||| || || ||| || Sbjct 85303 TTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 85244 Query 1863 TCGGACTAAGGTCCAAATGGCCGCAGAGATAATTGTGCGGCCCCAATGCACGAGCCCATG 1922 | | | ||| |||| | || | || ||||| | || ||| ||||||||||| Sbjct 85243 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCCCATG 85184 Query 1923 TCGTCTTCCC 1932 | | ||||| Sbjct 85183 TTATTTTCCC 85174 >seq33 Length=454124 Score = 77.0 bits (84), Expect = 6e-11 Identities = 217/331 (66%), Gaps = 12/331 (4%) Strand=Plus/Minus Query 1600 GATGGTGTAGAATTCCGCATTCTTGGAAGCCCACAATTTTAGTGATGCATTTGCTTCCTC 1659 |||| || |||||| ||||||| ||| |||| |||| || ||||| || Sbjct 403395 GATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTAT 403336 Query 1660 GTCGAGGAACTCTTTATAAGAAGATTT--GTTGCCTGGGTTGCAGAGAAAGATTGTGGGG 1717 |||| |||| |||||||||| | | | || || ||||| || | ||| || Sbjct 403335 ATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGA 403276 Query 1718 ATACCACCTTTAATCATTGTG--GGCTTTCCGTATTTGACGTTACTTTGCCAGTCACGTT 1775 || || | |||||| ||| || |||||||| || | || ||||||| | | Sbjct 403275 ATCCCGCTTTTAAT--TTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACT 403218 Query 1776 GTGCGCCCATGAATTCTTTGAAATGTTTC------AAATAATGCGGATCGACGTCATCAA 1829 || |||| | ||| | || |||| || |||||| ||| ||||||||||| Sbjct 403217 GTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAA 403158 Query 1830 TGACGTTATACCATGCATCGTTGGAATACACTTTCGGACTAAGGTCCAAATGGCCGCAGA 1889 ||||||||||||| || ||||| || || | ||| | | | |||| | ||| | Sbjct 403157 TGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTA 403098 Query 1890 GATAATTGTGCGGCCCCAATGCACGAGCCCA 1920 ||||| || || ||||| | ||| ||||| Sbjct 403097 TGTAATTATGTGGACCCAACGAACGTGCCCA 403067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8609403827570