Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_014968.1 Length=2799 Score E Sequences producing significant alignments: (Bits) Value seq3283 127 4e-26 seq3439 123 4e-25 seq20728 87.8 3e-14 >seq3283 Length=49157 Score = 127 bits (140), Expect = 4e-26 Identities = 207/291 (71%), Gaps = 14/291 (5%) Strand=Plus/Minus Query 1721 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTACCGTA 1780 ||| |||||||| || | |||| | ||||| || ||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1781 -TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCT------ 1833 ||| || ||| ||||| | ||| || || | ||| | || | | |||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1834 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTT 1893 ||| || | || |||||| || |||||||||||||| ||| || |||| || Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTAC-GTT 2104 Query 1894 TTGGGCTT-AAGTC--TAAATGGCCACACAGATAATTATGTGGTCCTAAAGATCTAGCCC 1950 |||| || || || ||||| || | || || ||||| ||||| || | ||||| Sbjct 2103 TTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1951 ATACTGTTTTACCTATTCTACTTGGGCCTTCTATAACAATACTAATGGGCC 2001 || ||||||| |||||||| ||||||||| |||| ||| || ||||||| Sbjct 2045 ATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq3439 Length=62978 Score = 123 bits (136), Expect = 4e-25 Identities = 201/285 (71%), Gaps = 12/285 (4%) Strand=Plus/Minus Query 1726 GATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTACCGTATTTAC 1785 ||||||| || | |||| | ||||| || ||||||||||||||||| || ||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1786 AGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGGT 1839 |||| ||||| | ||| || || | ||| | || | | |||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1840 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTTTTGGGC 1899 | | || ||| ||||| |||||||||||||| ||| || |||| |||||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTAC-GTTTTGGAA 778 Query 1900 TT-AAGTC--TAAATGGCCACACAGATAATTATGTGGTCCTAAAGATCTAGCCCATACTG 1956 || || || ||||| || | || || ||||| ||||| || | ||||||| ||| Sbjct 777 TTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTG 720 Query 1957 TTTTACCTATTCTACTTGGGCCTTCTATAACAATACTAATGGGCC 2001 |||| |||||||| ||||||||| |||| ||| || ||||||| Sbjct 719 TTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 675 >seq20728 Length=3653 Score = 87.8 bits (96), Expect = 3e-14 Identities = 183/266 (69%), Gaps = 15/266 (6%) Strand=Plus/Plus Query 1746 GGAATTCCACCTTTAATTTGAACTGGCTTACCGTA-TTTACAGTTGCTTTGCCAGTCCTT 1804 ||||| || ||||||||||||| ||| || ||||| ||| || ||| |||| || Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCA-TTGGCCTGCC-GTTGCG 1499 Query 1805 CTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGGTATTGGGGGTTGACGTCATC 1858 ||| || || | ||| | || | | |||| ||| || | || ||||||||| Sbjct 1500 CTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1859 AATGACGTTATACCAAGCACTGTTGCTGTACACTTTTGGGCTTAAGTC--TAAATGGCCA 1916 ||||||||||| || ||| || |||| ||| | | || || ||||| | Sbjct 1560 GATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATAAAT---CT 1616 Query 1917 CA-CAGATAATTATGTGGTCCTAAAGATCTAGCCCATACTGTTTTACCTATTCTACTTGG 1975 || | || || ||||| |||| || | ||||||| ||||||| |||||||| ||| Sbjct 1617 CATTATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGG 1676 Query 1976 GCCTTCTATAACAATACTAATGGGCC 2001 |||||| |||| ||| || |||| || Sbjct 1677 GCCTTCAATAATAATGCTCATGGCCC 1702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8836140318900