Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_015317.1 Length=2782 Score E Sequences producing significant alignments: (Bits) Value seq3439 116 6e-23 seq3283 114 2e-22 seq1993 105 1e-19 seq5745 104 4e-19 seq77518 100 5e-18 seq490 84.2 4e-13 seq22495 82.4 1e-12 seq20728 80.6 5e-12 seq35612 78.8 2e-11 >seq3439 Length=62978 Score = 116 bits (128), Expect = 6e-23 Identities = 197/284 (69%), Gaps = 10/284 (4%) Strand=Plus/Minus Query 1708 GATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTAC 1767 ||||||| || | |||| | ||||| |||||||||||||||||||| |||||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1768 AGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGGT 1821 ||||| ||||| | ||| || || | ||| | || | | |||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1822 ATTGGGGGTTGACGTCATCAATGATGTTATACCAAGCACTGTTGCTATACACTTTTGGAC 1881 | | || ||| ||||| |||| ||||||||| ||| || ||| ||| | | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1882 TCAGATC--TAAATGACCACACAGATAATTATGTGGACCTAAAGACCTAGCCCAAACTGT 1939 | | ||| ||||| || | || || ||||| ||||| || | |||||| |||| Sbjct 776 TAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGT 719 Query 1940 TTTACCTATCCTACTTGGGCCTTCTATTACAATACTTATGGGCC 1983 ||| ||||| || ||||||||| || | ||| || ||||||| Sbjct 718 TTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 675 >seq3283 Length=49157 Score = 114 bits (126), Expect = 2e-22 Identities = 202/290 (70%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 1703 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1762 ||| |||||||| || | |||| | ||||| |||||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1763 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCT------ 1815 ||| || |||| ||||| | ||| || || | ||| | || | | |||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1816 TTAGGTATTGGGGGTTGACGTCATCAATGATGTTATACCAAGCACTGTTGCTATACACTT 1875 ||| || | || |||||| || |||| ||||||||| ||| || ||| || Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 2103 Query 1876 TTGGACTCAGATC--TAAATGACCACACAGATAATTATGTGGACCTAAAGACCTAGCCCA 1933 | | | | | ||| ||||| || | || || ||||| ||||| || | |||||| Sbjct 2102 TGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 Query 1934 AACTGTTTTACCTATCCTACTTGGGCCTTCTATTACAATACTTATGGGCC 1983 ||||||| ||||| || ||||||||| || | ||| || ||||||| Sbjct 2044 TGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq1993 Length=81530 Score = 105 bits (116), Expect = 1e-19 Identities = 204/293 (70%), Gaps = 15/293 (5%) Strand=Plus/Minus Query 1701 TCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCG 1760 || || |||||||| || | |||| ||||| ||| |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1761 TA-TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCTTT-- 1817 || ||| || ||| | ||||| | || || | | ||| | || | | || ||| Sbjct 74346 TACTTTGCATTTG-ACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1818 ----AGGTAT--TGGGGGTTGACGTCATCAATGATGTTATACCAAGCACTGTTGCTATAC 1871 | || ||| || |||||||||||||| ||||||||| || |||| || Sbjct 74287 AATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTTGTTCGATTAT 74230 Query 1872 ACTTTTGGACTCAGATCTA-AATGACCACACAGATAATTATGTGGACCTAAAGACCTAGC 1930 ||| | | ||| ||| | || | ||| | ||||||||||||||| || || | | Sbjct 74229 GTTTTCGAATTCAAATCCATAAAGCCCATT-ATATAATTATGTGGACCCAACGAACGTGT 74171 Query 1931 CCAAACTGTTTTACCTATCCTACTTGGGCCTTCTATTACAATACTTATGGGCC 1983 ||||||||||||||| || ||| || ||||| || | ||| || |||||| Sbjct 74170 CCAAACTGTTTTACCGATTCTAGAAGGTCCTTCAATAATAAT-TTTTTGGGCC 74119 >seq5745 Length=45059 Score = 104 bits (114), Expect = 4e-19 Identities = 201/290 (69%), Gaps = 14/290 (5%) Strand=Plus/Plus Query 1704 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA- 1762 || |||||||| | | |||| ||||| || ||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1763 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTT--TAAAGTGCTTTAGG 1820 ||| || ||| | ||||| | || || || ||||| | || ||| || |||| Sbjct 43601 TTTGCATTTG-ACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1821 TAT------TGGGGGTTGACGTCATCAATGATGTTATACCAAGCACTGTTGCTATACACT 1874 || ||| || || ||||||||||| ||||||||| || ||| || | Sbjct 43660 TAAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1875 TTTGGACTCAGATCTA-AATGACCACACAGATAATTATGTGGACCTAAAGACCTAGCCCA 1933 || | | ||| ||| | || | ||| | ||||||||||||||| || || | ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCATT-ATATAATTATGTGGACCCAACGAACGTGCCCA 43776 Query 1934 AACTGTTTTACCTATCCTACTTGGGCCTTCTATTACAATACTTATGGGCC 1983 |||||||||||| || ||| || | | | || | ||| ||| ||| || Sbjct 43777 AACTGTTTTACCGATTCTAGAAGGTCTTGCAATAATAATGCTTTTGGACC 43826 >seq77518 Length=14724 Score = 100 bits (110), Expect = 5e-18 Identities = 200/289 (69%), Gaps = 17/289 (6%) Strand=Plus/Minus Query 1704 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA- 1762 || |||||||| || | |||| ||||| ||||||||||||||||||| ||| |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1763 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGC--TTTAGG 1820 ||| || || || || |||| || || || | ||| | || | | ||| |||| Sbjct 2340 TTTGCA-TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1821 TA------TTGGGGGTTGACGTCATCAATGATGTTATACCAAGCACTGTTGCTATACACT 1874 || ||| || ||| |||||||||| ||||||||| || ||| || | Sbjct 2281 TAAATAAGCTGGAGG--GACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 2224 Query 1875 TTTGGACTCAGATCTA-AATGACCACACAGATAATTATGTGGACCTAAAGACCTAGCCCA 1933 || | ||| ||| | || | ||| | ||||||||||||||| || | | ||||| Sbjct 2223 TTCAAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCCA 2165 Query 1934 AACTGTTTTACCTATCCTACTTGGGCCTTCTATTACAATACTTATGGGC 1982 |||||||||||| || ||| || ||||| || | ||| || ||||| Sbjct 2164 AACTGTTTTACCGATTCTA---GGTCCTTCAATAATAATGTTTTTGGGC 2119 >seq490 Length=137872 Score = 84.2 bits (92), Expect = 4e-13 Identities = 197/292 (67%), Gaps = 14/292 (5%) Strand=Plus/Minus Query 1709 ATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTACA 1768 |||||| |||| || | || ||||| ||||||||||| | |||||| | ||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1769 GTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCTTT--------AGG 1820 | | ||||||| | || |||||| || | || | | ||||| || Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1821 TATTGGGGGTTGACGTCATCAATGATGTTATACCAAGCACTG-TTGCTATACACTTTTGG 1879 | ||| || ||||||||| |||| ||||||||| | ||| ||| | | ||| Sbjct 70498 TGCTGGAGG--GACGTCATCTATGACGTTATACCATG-ACTCATTGGAAAATGTCTTTCT 70442 Query 1880 ACTCAGATCTA-AATGACCACACAGATAATTATGTGGACCTAAAGACCTAGCCCAAACTG 1938 | | | ||| | || | ||| | || |||||||||||||| ||| |||||||| | | Sbjct 70441 ATTGAAATCCATAACGCCCATAAAG-TAATTATGTGGACCCAAACTTCTAGCCCATTCAG 70383 Query 1939 TTTTACCTATCCTACTTGGGCCTTCTATTACAATACTTATGGGCCTATCTGG 1990 | || || | ||| ||| |||||||| | | | |||||||||||||| Sbjct 70382 TCTTCCCAAGTCTAGATGGACCTTCTATAATTAAAGACATGGGCCTATCTGG 70331 >seq22495 Length=567 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 1703 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1762 ||| |||||||| || | |||| | |||| |||| ||||||||||||||| |||||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1763 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCT------ 1815 ||| || |||| ||||||| ||| || || | ||| | || | | |||| Sbjct 308 CTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1816 TTAGGTATTGGGGGTTGACGTCATCAATGATGTTATACCAAGCA 1859 ||| || | || || |||||| |||| ||||||||| ||| Sbjct 249 TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCA 206 >seq20728 Length=3653 Score = 80.6 bits (88), Expect = 5e-12 Identities = 180/264 (68%), Gaps = 11/264 (4%) Strand=Plus/Plus Query 1728 GGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA-TTTACAGTTGGATTGCCAGTCCTT 1786 ||||| || ||||||||||||| ||| |||||||| ||| || |||| |||| || Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCA-TTGGCCTGCC-GTTGCG 1499 Query 1787 CTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGGTATTGGGGGTTGACGTCATC 1840 ||| || || | ||| | || | | |||| ||| || | || ||||||||| Sbjct 1500 CTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1841 AATGATGTTATACCAAGCACTGTTGCTATACACTTTTGGACTCAGATCTAAATGACCACA 1900 |||| |||||| || ||| || ||| ||| | | | | ||||| | | | || Sbjct 1560 GATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATA-AATCTCA 1618 Query 1901 -CAGATAATTATGTGGACCTAAAGACCTAGCCCAAACTGTTTTACCTATCCTACTTGGGC 1959 | || || ||||| |||| || | |||||| ||||||| ||||| || ||||| Sbjct 1619 TTATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGC 1678 Query 1960 CTTCTATTACAATACTTATGGGCC 1983 |||| || | ||| || |||| || Sbjct 1679 CTTCAATAATAATGCTCATGGCCC 1702 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 1703 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1762 ||| |||||||| || | |||| | ||||| |||||||||||||||||||| |||||||| Sbjct 1509 TCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTA 1568 Query 1763 TTTACAGTTGGATTGCCA 1780 || ||||| ||||| Sbjct 1569 CTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8781793580325