Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_015324.1 Length=2824 Score E Sequences producing significant alignments: (Bits) Value seq3439 123 4e-25 seq3283 122 2e-24 seq54129 111 3e-21 seq22495 82.4 1e-12 seq490 80.6 5e-12 seq35612 78.8 2e-11 >seq3439 Length=62978 Score = 123 bits (136), Expect = 4e-25 Identities = 204/285 (72%), Gaps = 16/285 (6%) Strand=Plus/Minus Query 1763 GATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTAC 1822 ||||||| || | |||| | ||||| |||||||||||||||||||| |||||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1823 AGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTGA-AGTGCT------TTAGG 1875 ||||| ||||| | ||| || || | ||| | |||| | |||| ||| Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCTTAATTAAA 838 Query 1876 TATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTACTATATAC-TTTTGG 1934 || | || ||| ||||| |||||||||||||| ||| || | ||| |||||| Sbjct 837 TAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT--TGAGTACGTTTTGG 780 Query 1935 GCTT-AGATC--TAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATAC 1991 || | ||| ||||| |||| | || ||||| ||||| || || | |||||| | Sbjct 779 AATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 722 Query 1992 TGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGG 2036 |||||| |||||||| |||||||||||||| |||| ||||| Sbjct 721 TGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 677 >seq3283 Length=49157 Score = 122 bits (134), Expect = 2e-24 Identities = 209/291 (72%), Gaps = 18/291 (6%) Strand=Plus/Minus Query 1758 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1817 ||| |||||||| || | |||| | ||||| |||||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1818 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTGA-AGTGCT----- 1870 ||| || |||| ||||| | ||| || || | ||| | |||| | |||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCTTA 2164 Query 1871 -TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTACTATATAC- 1928 ||| || | || |||||| || |||||||||||||| ||| || | ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACG 2106 Query 1929 TTTTGGGCTT-AGATC--TAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGC 1985 |||||| || | ||| ||||| |||| | || ||||| ||||| || || | || Sbjct 2105 TTTTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGC 2048 Query 1986 CCATACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGG 2036 |||| ||||||| |||||||| |||||||||||||| |||| ||||| Sbjct 2047 CCATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1997 >seq54129 Length=2260 Score = 111 bits (122), Expect = 3e-21 Identities = 203/289 (70%), Gaps = 14/289 (5%) Strand=Plus/Minus Query 1758 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1817 ||| |||||||| || | |||| | ||||| |||||||||||||||| ||| |||||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1818 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTGAAGTGCT------ 1870 ||| || |||| || |||| | ||| || || | ||| | | | | |||| Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1871 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTACTATATACTT 1930 ||| || | || ||| || || |||||||||||||| || || ||| || Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTAT-GTT 2081 Query 1931 TTGGGCTTAGA--TC-TAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCC 1987 |||| ||| | || ||||| |||| | || ||||| ||| || || | |||| Sbjct 2080 TTGGAATTAAAATTCATAAAT-CCCA-TTATGTAGTTGTGTTGGCATAATGAACGAGCCC 2023 Query 1988 ATACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGG 2036 || ||||||| |||||||| |||||||||||||| |||| ||||| Sbjct 2022 ATGCTGTTTTTCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1974 >seq22495 Length=567 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/165 (73%), Gaps = 10/165 (6%) Strand=Plus/Minus Query 1758 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1817 ||| |||||||| || | |||| | |||| |||| ||||||||||||||| |||||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1818 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTGA-AGTGCT----- 1870 ||| || |||| ||||||| ||| || || | ||| | |||| | |||| Sbjct 308 CTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACT-GTTGACAATGCTTCTTA 251 Query 1871 -TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCA 1914 ||| || | || || |||||| |||||||||||||| ||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCA 206 >seq490 Length=137872 Score = 80.6 bits (88), Expect = 5e-12 Identities = 196/292 (67%), Gaps = 14/292 (5%) Strand=Plus/Minus Query 1764 ATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTACA 1823 |||||| |||| || | || ||||| ||||||||||| | |||||| | ||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1824 GTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTGAAGTGCTT--------TAGG 1875 | | ||||||| | || |||||| || | ||| | | ||||| || Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1876 TATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACT-GTTACTATATACTTTTGG 1934 | ||| || ||||||||| |||||||||||||| | ||| || | || ||| Sbjct 70498 TGCTGGAGG--GACGTCATCTATGACGTTATACCATG-ACTCATTGGAAAATGTCTTTCT 70442 Query 1935 GCTTAGATCTA-AATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTG 1993 | | ||| | || ||||| | || ||||| || || |||||| || |||||| | | Sbjct 70441 ATTGAAATCCATAACGCCCATA-AAGTAATTATGTGGACCCAAACTTCTAGCCCATTCAG 70383 Query 1994 TTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGGTCTATCCGG 2045 | || || | ||| ||| ||||| |||| | || ||||| ||||| || Sbjct 70382 TCTTCCCAAGTCTAGATGGACCTTCTATAATTAAAGACATGGGCCTATCTGG 70331 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 1758 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1817 ||| |||||||| || | |||| | ||||| |||||||||||||||||||| |||||||| Sbjct 1509 TCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTA 1568 Query 1818 TTTACAGTTGGATTGCCA 1835 || ||||| ||||| Sbjct 1569 CTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8916061993275