Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_015397.1 Length=2566 Score E Sequences producing significant alignments: (Bits) Value seq77518 86.0 1e-13 seq22495 84.2 4e-13 seq3439 84.2 4e-13 seq3283 84.2 4e-13 seq1993 84.2 4e-13 seq33 84.2 4e-13 seq30129 77.0 5e-11 >seq77518 Length=14724 Score = 86.0 bits (94), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 7/169 (4%) Strand=Plus/Minus Query 1563 CTGGACCCTTCACCAGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACA 1622 |||||||| |||||||||||||| ||||| |||| || ||||||||||||||||| Sbjct 2408 CTGGACCC----CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACT 2353 Query 1623 GGCTTTCCATA-TTTGCAGTTGCTTTGCCAGTCTCGTTGGGCCCCAACGAGCTCTTTCCA 1681 | ||| | || |||||| ||| || |||| ||||| || || |||| || || | Sbjct 2352 GATTTTTCGTACTTTGCATTTG-ACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATA 2294 Query 1682 GTGCTTTAGCTTTAGGTATTGCGGTGGCAACGTCATCAATGACGTTGTA 1730 |||||| ||| || || | | || |||||||||||||| || Sbjct 2293 ATGCTTTTTAATTAAATA-AGCTGGAGGGACATCATCAATGACGTTATA 2246 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 115/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 1575 CCAGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCATA- 1633 |||||||||||||| ||||| | | || |||| |||||||||||| || ||||| || Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1634 TTTGCAGTTGCTTTGCCAGTCTCGTTGGGCCCCAACGAGCTCTTTCCAGTGCTTTAGCTT 1693 |||||| ||| ||||||| || || || || |||| || || || ||||| | Sbjct 307 TTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1694 TAGGTATTGCGGTGGCAACGTCATCAATGACGTTGTA 1730 || || | ||| || | |||||| |||||||| || Sbjct 248 TAAATAATTCGGAGG-GATGTCATCGATGACGTTATA 213 >seq3439 Length=62978 Score = 84.2 bits (92), Expect = 4e-13 Identities = 115/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 1575 CCAGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCATA- 1633 ||| |||||||||| ||||| ||| || ||||||||||||||||| || ||||| || Sbjct 960 CCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTAC 901 Query 1634 TTTGCAGTTGCTTTGCCAGTCTCGTTGGGCCCCAACGAGCTCTTTCCAGTGCTTTAGCTT 1693 ||||| |||| ||||| | ||| || || || |||| || || | ||||| | Sbjct 900 TTTGC-GTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 842 Query 1694 TAGGTATTGCGGTGGCAACGTCATCAATGACGTTGTA 1730 || || | ||| || || ||||| |||||||| || Sbjct 841 TAAATAATTCGGAGG-GACATCATCGATGACGTTATA 806 >seq3283 Length=49157 Score = 84.2 bits (92), Expect = 4e-13 Identities = 115/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 1575 CCAGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCATA- 1633 |||||||||||||| ||||| ||| || ||||||||||||||||| || || || || Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1634 TTTGCAGTTGCTTTGCCAGTCTCGTTGGGCCCCAACGAGCTCTTTCCAGTGCTTTAGCTT 1693 |||||| ||| ||||| | ||| || || || |||| || || | ||||| | Sbjct 2220 TTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1694 TAGGTATTGCGGTGGCAACGTCATCAATGACGTTGTA 1730 || || | ||| || ||||| || |||||||| || Sbjct 2161 TAAATAATTCGGAGG-GACGTCGTCGATGACGTTATA 2126 >seq1993 Length=81530 Score = 84.2 bits (92), Expect = 4e-13 Identities = 117/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 1572 TCACCAGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCA 1631 || |||||||||||||||||||| |||| || ||| ||||||||||||| || || || Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1632 TA-TTTGCAGTTGCTTTGCCAGTCTCGTTGGGCCCCAACGAGCTCTTTCCAGTGCTTTAG 1690 || |||||| ||| ||||| | ||||| || | |||| || || | || ||| Sbjct 74346 TACTTTGCATTTG-ACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1691 CTTTAGGTATTGCGGTGGCAACGTCATCAATGACGTTGTA 1730 ||| || || | | ||||||||||||||||| || Sbjct 74287 AATTAAATA-AGCTGGAGGGACGTCATCAATGACGTTATA 74249 >seq33 Length=454124 Score = 84.2 bits (92), Expect = 4e-13 Identities = 115/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 1575 CCAGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCATA- 1633 |||||||||||||||||||| |||| || |||| |||||||||||| || ||||| || Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1634 TTTGCAGTTGCTTTGCCAGTCTCGTTGGGCCCCAACGAGCTCTTTCCAGTGCTTTAGCTT 1693 |||||| ||| ||||||| | || | || |||| || || | || ||| | Sbjct 403242 TTTGCATTTG-ACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1694 TAGGTATTGCGGTGGCAACGTCATCAATGACGTTGTA 1730 || || || | | ||||||||||||||||| || Sbjct 403183 TAAATA-AGCTGGAGGGACGTCATCAATGACGTTATA 403148 >seq30129 Length=3650 Score = 77.0 bits (84), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 1575 CCAGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCATA- 1633 |||||||||||||| ||||| ||| || ||||||||||||||||| | ||||| || Sbjct 2374 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCGTAC 2433 Query 1634 TTTGCAGTTGCTTTGCCAGTCTCGTTGGGCCCCAACGAGCTCTT 1677 |||||| ||| ||||| | ||| || || || |||| || || Sbjct 2434 TTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTT 2476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8094693832680