Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_016082.1 Length=2621 Score E Sequences producing significant alignments: (Bits) Value seq5745 111 3e-21 seq3283 107 3e-20 seq1993 104 4e-19 seq5493 98.7 2e-17 seq33 98.7 2e-17 seq4295 93.3 7e-16 seq3439 93.3 7e-16 seq1010 93.3 7e-16 seq77518 87.8 3e-14 seq22495 78.8 2e-11 seq6801 77.0 5e-11 >seq5745 Length=45059 Score = 111 bits (122), Expect = 3e-21 Identities = 184/261 (70%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 1554 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACAGGCTTACCGTA- 1612 ||||||||||||| |||||| ||| || ||||||||||||||||| || || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1613 TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTT 1672 ||||| |||||||||||||| ||| || || | || | || | || ||| | Sbjct 43601 TTTGC-ATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1673 TAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACCGCGTTTGA--ATAGACT 1730 || ||| || | || ||||||||||||||||||| | |||| || || | Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTT 43719 Query 1731 CGACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCAC 1790 ||| ||| || |||| || | | ||| |||||||| || |||| ||||||||| Sbjct 43720 CGA--ATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAA 43777 Query 1791 ATCGTCTTCCCTGTTCTTGAA 1811 | || || || |||| ||| Sbjct 43778 ACTGTTTTACCGATTCTAGAA 43798 >seq3283 Length=49157 Score = 107 bits (118), Expect = 3e-20 Identities = 180/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1554 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACAGGCTTACCGTA- 1612 |||||||||||||| ||||| ||| || || |||||||||||||| || || ||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1613 TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTT 1672 |||||| || | |||||||| | || || || | || | || | ||||| | Sbjct 2220 TTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1673 TAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACCGCGTTTGAATAGACTCG 1732 || ||| | ||| | |||||| || |||||||||||| | | ||||| || | Sbjct 2161 TAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 2102 Query 1733 ACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCACAT 1792 ||| || |||| ||| | | ||||| ||||||||||| | ||| ||||| Sbjct 2101 GGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 2042 Query 1793 CGTCTTCCCTGTTCTTGA 1810 || |||||| ||||||| Sbjct 2041 TGTTTTCCCTATTCTTGA 2024 >seq1993 Length=81530 Score = 104 bits (114), Expect = 4e-19 Identities = 189/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 1551 TCACCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACAGGCTTACCG 1610 || |||||||||||||||||||| ||| || || ||||||||||||| || || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1611 TA-TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAG 1669 || |||||| ||||||||||||| ||| || | | || | || | || ||| Sbjct 74346 TACTTTGCA-TTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1670 CTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACCGCGTTTGA--ATAG 1727 ||| ||| || | |||||||||||||||||||||| | | ||| || || Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGT 74228 Query 1728 ACTCGACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCC 1787 |||| ||| || |||| || | | ||| |||||||| || |||| ||||| | Sbjct 74227 TTTCGA--ATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTC 74170 Query 1788 CACATCGTCTTCCCTGTTCTTGAATCACCTTC 1819 || | || || || |||| ||| ||||| Sbjct 74169 CAAACTGTTTTACCGATTCTAGAAGGTCCTTC 74138 >seq5493 Length=32325 Score = 98.7 bits (108), Expect = 2e-17 Identities = 116/154 (75%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 1557 GGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACAGGCTTACCGTATTTG 1616 |||||||| | ||| || || |||||||| |||||||||||| || |||||||| || Sbjct 31559 GGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTTC 31500 Query 1617 CAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAG-TGCTTTAGCTTTAG 1675 |||||| ||||| | | ||| | || || | ||||||||| | |||| || || Sbjct 31499 ACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAGCTTCTTT-GC---AG 31444 Query 1676 ATATTGCGGTGCGACGTCATCAATGACGTTATAC 1709 |||| ||||| ||||||||||||| ||| ||| Sbjct 31443 ATATGTCGGTGATACGTCATCAATGATGTTGTAC 31410 >seq33 Length=454124 Score = 98.7 bits (108), Expect = 2e-17 Identities = 168/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1554 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACAGGCTTACCGTA- 1612 |||||||||||||||||||| ||| || || | |||||||||||| || || ||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1613 TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTT 1672 |||||| ||||||||||| | || | || | || | || | || ||| | Sbjct 403242 TTTGCA-TTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1673 TAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACCGCGTTTGA--ATAGACT 1730 || ||| || | |||||||||||||||||||||| | | |||| || || || Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1731 CGACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCA 1789 ||| ||| || |||| || | | || |||||||| || |||| ||||||||| Sbjct 403123 CGA--ATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq4295 Length=67413 Score = 93.3 bits (102), Expect = 7e-16 Identities = 189/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 1557 GGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACAGGCTTACCGTATTTG 1616 |||||| | ||||||||| ||||||||| |||||||||||| | || |||||||| ||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1617 CAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTTAGA 1676 |||||| | ||||| | |||||| | | | ||||| || | ||| || | | Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1677 TATTGCGGTGCGACGTCATCAATGACGTTATACTCCACCGCGTTTGAATA-GA-CTCGAC 1734 || | | |||||||| || ||||| ||| | || ||| | || |||| Sbjct 46723 TAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGA- 46665 Query 1735 CATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCACATCG 1794 ||| || |||| | || | | ||||||||||||| ||| | |||||||| || | Sbjct 46664 -ATTAAAATCCATGAAGCCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTG 46606 Query 1795 TCTTCCCTGTTCTTGAATCACCTTCTACTATGAGACT 1831 |||| |||| | | ||||| ||||||||| Sbjct 46605 TCTTTAAAATTCTAGTTGGGCATTCTAATATGAGACT 46569 >seq3439 Length=62978 Score = 93.3 bits (102), Expect = 7e-16 Identities = 177/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1554 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACAGGCTTACCGTA- 1612 ||| |||||||||| ||||| ||| || || |||||||||||||| || || ||||| Sbjct 960 CCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTAC 901 Query 1613 TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTT 1672 ||||| || | ||||||| | || || || | || | || | ||||| | Sbjct 900 TTTGC-GTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 842 Query 1673 TAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACCGCGTTTGAATAGACTCG 1732 || ||| | ||| | ||| ||||| |||||||||||| | | ||||| || | Sbjct 841 TAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 782 Query 1733 ACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCACAT 1792 ||| || |||| ||| | | ||||| ||||||||||| | ||| ||||| Sbjct 781 GGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 722 Query 1793 CGTCTTCCCTGTTCTTGA 1810 || |||||| ||||||| Sbjct 721 TGTTTTCCCTATTCTTGA 704 >seq1010 Length=204159 Score = 93.3 bits (102), Expect = 7e-16 Identities = 195/283 (69%), Gaps = 12/283 (4%) Strand=Plus/Plus Query 1554 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACAGGCTTACCGTAT 1613 || |||||||| |||||||| ||||||| | ||||||||||||| | |||||||| Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTAC 36543 Query 1614 TTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1673 ||| || ||| ||||||| | | ||||| | || |||||||| | ||| | Sbjct 36544 TTGACATGTGATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCAAT--TTTTTTTGC 36601 Query 1674 AGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACCGCGT---TTGAATA-GA- 1728 | ||| | | || ||||| |||| ||||| ||| || | | ||| | || Sbjct 36602 AAATAGGATCGAGACACATCATCTATGAAATTATA--CCA-TGCATTAATCGAAAATGAT 36658 Query 1729 CTCGACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCC 1788 |||| ||| || |||| | || | | |||||| |||||||||| | ||||||| Sbjct 36659 TTCGA--ATTAAAATCCATGAAGCCCATTATGTAGTTACGTGGGCCTAAAGATCGTGCCC 36716 Query 1789 ACATCGTCTTCCCTGTTCTTGAATCACCTTCTACTATGAGACT 1831 | || |||||||| |||| | ||||||| ||||||||| Sbjct 36717 ATATTGTCTTCCCAATTCTAGCTGGGCCTTCTAATATGAGACT 36759 >seq77518 Length=14724 Score = 87.8 bits (96), Expect = 3e-14 Identities = 174/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 1554 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACAGGCTTACCGTA- 1612 |||||||||||||| ||||| ||| || || |||||||||||||| | || |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1613 TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTT 1672 |||||| |||||||| || | ||| || || | || | || | |||||| | Sbjct 2340 TTTGCA-TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1673 TAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACCGCGTTTGAATAGACTCG 1732 || ||| || | ||| |||||||||||||||||| | | |||| || || | Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTT 2222 Query 1733 ACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCACAT 1792 ||| || |||| || | | ||| |||||||| || ||| ||||||||| | Sbjct 2221 CAAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAAAC 2162 Query 1793 CGTCTTCCCTGTTCT 1807 || || || |||| Sbjct 2161 TGTTTTACCGATTCT 2147 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 113/157 (72%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 1554 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACAGGCTTACCGTA- 1612 |||||||||||||| ||||| | | || || | |||||||||||| || || ||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1613 TTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTT 1672 ||||| ||| | |||||| | || || || | || | || || ||||| | Sbjct 307 TTTGC-ATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1673 TAGATATTGCGGTGCGACGTCATCAATGACGTTATAC 1709 || ||| | ||| | || |||||| |||||||||||| Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATAC 212 >seq6801 Length=49729 Score = 77.0 bits (84), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 13/113 (12%) Strand=Plus/Plus Query 1524 TCCAGGAACTCTTTATAG-------CTGGAACCCTCACCAGGATTGCAAAGCACGATTGC 1576 |||| |||| |||||||| ||||| |||| |||| ||||||| ||||| Sbjct 47061 TCCAAGAACGCTTTATAGGACAAATCTGGACCCCT----AGGAGTGCAAAGTACGATACA 47116 Query 1577 TGGGATTCCACCTTTAATTTGAACAGGCTTACCGTA-TTTGCAATTTGACTGC 1628 ||| || || |||||||||||||| || || ||||| ||||| |||||||||| Sbjct 47117 TGGAATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGC-ATTTGACTGC 47168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8270526439630