Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_016573.1 Length=2678 Score E Sequences producing significant alignments: (Bits) Value seq3283 102 1e-18 seq5745 96.9 6e-17 seq3439 96.9 6e-17 seq54129 80.6 5e-12 seq22495 77.0 5e-11 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 230/344 (67%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 1503 ATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAGGCCCTCAATGA 1562 |||| |||||| ||||| |||| ||||| ||||| || || ||||| | || | | Sbjct 2386 ATAGTGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 2327 Query 1563 TGCATTTTCCTCCTTGTCGAGATACTCTTTATA--ACTGGCCCCCTCTCCAGGATTGCAG 1620 || ||| |||| || | || |||||| | || | || |||||||||| Sbjct 2326 TGAATTGGACTCCAAATCCAAGAACGTTTTATAGGATTGATCAGGTC--CAGGATTGCAA 2269 Query 1621 AGCACGATTGATGGGATACCCCCTTTAATCTTTCTTGGCTTGCCGTACTTGCAATTTGAC 1680 || ||||| ||| || || |||||||| | ||| || |||||||| ||| | | Sbjct 2268 AGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCC 2209 Query 1681 TGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTAATGGGGT 1740 ||||| | | || || || | || | | | ||||| ||| |||| || Sbjct 2208 TGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGA 2149 Query 1741 GTGACATCATCGATGACGTTATACTCAGCTTCGTCTGAGTAGACCCGGGAATTGAAATCT 1800 | ||| || ||||||||||||||| || || | |||||| |||||| ||||| Sbjct 2148 GGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCC 2089 Query 1801 AGATGGCCGCTTAAGTAATTATGTGGGCCTAATGCACGAGCCCA 1844 | | || ||| ||| || ||||||||||||| ||||||||| Sbjct 2088 ATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq5745 Length=45059 Score = 96.9 bits (106), Expect = 6e-17 Identities = 243/370 (66%), Gaps = 11/370 (3%) Strand=Plus/Plus Query 1503 ATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAGGCCCTCAATGA 1562 |||||| |||| ||||| |||| |||| |||||| || | ||| | | || | Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1563 TGCATTTTCCTCCTTGTCGAGATACTCTTTATAA-------CTGGCCCCCTCTCCAGGAT 1615 || |||| || | || | || |||||||| |||| |||| |||||| Sbjct 43492 TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCC----CAGGAT 43547 Query 1616 TGCAGAGCACGATTGATGGGATACCCCCTTTAATCTTTCTTGGCTTGCCGTACTTGCAAT 1675 |||| | |||||| |||| || || |||||||| | ||| ||||||||||| || Sbjct 43548 TGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCAT 43607 Query 1676 TTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTAAT 1735 |||||||||| | ||| || || || || | | | || ||| ||| ||| Sbjct 43608 TTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAG 43667 Query 1736 GGGGTGTGACATCATCGATGACGTTATACTCAGCTTCGTCTGAGTAGACCCGGGAATTGA 1795 || | || ||||| |||||||||||| || |||| || || ||||| | Sbjct 43668 CTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCA 43727 Query 1796 AATCTAGATGGCCGCTTAAGTAATTATGTGGGCCTAATGCACGAGCCCACATCGTCTTGC 1855 |||| | | ||| ||| ||||||||||| || || | ||| ||||| | || || | Sbjct 43728 AATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTAC 43787 Query 1856 CCGTTCGAGA 1865 | ||| ||| Sbjct 43788 CGATTCTAGA 43797 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 229/345 (66%), Gaps = 6/345 (2%) Strand=Plus/Minus Query 1503 ATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAGGCCCTCAATGA 1562 ||||||||||| ||||| |||| |||| ||||| || || ||||| | || | | Sbjct 1066 ATAGAGGGGGGTGTCGACGAAGTGAAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 1007 Query 1563 TGCATTTTCCTCCTTGTCGAGATACTCTTTATAACTGGCCCCCTC---TCCAGGATTGCA 1619 || ||| |||| || | || |||||| || || |||| ||||||| Sbjct 1006 TGAATTGGACTCCAAATCTAAGAACGTTTTATA---GGATAATTCAGGTCCAAGATTGCA 950 Query 1620 GAGCACGATTGATGGGATACCCCCTTTAATCTTTCTTGGCTTGCCGTACTTGCAATTTGA 1679 || ||||| ||| || || |||||||| | ||| || |||||||| || | Sbjct 949 AAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGC 890 Query 1680 CTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTAATGGGG 1739 ||||| | | || || || | || | | | ||||| ||| |||| || Sbjct 889 ATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGG 830 Query 1740 TGTGACATCATCGATGACGTTATACTCAGCTTCGTCTGAGTAGACCCGGGAATTGAAATC 1799 | |||||||||||||||||||||| || || | |||||| |||||| ||||| Sbjct 829 AGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATC 770 Query 1800 TAGATGGCCGCTTAAGTAATTATGTGGGCCTAATGCACGAGCCCA 1844 | | || ||| ||| || ||||||||||||| ||||||||| Sbjct 769 CATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 160/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 1608 TCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATCTTTCTTGGCTTGCCGTA 1667 |||||||||||| || ||||| ||| || || |||||||| | |||| || ||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1668 CTTGCAATTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTT 1727 ||| ||| | ||| || | | || || || | || | | | ||||| | Sbjct 2198 CTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAAT 2139 Query 1728 TAGGTAATGGGGTGTGACATCATCGATGACGTTATACTCAGCTTCGTCTGAGTAGACCCG 1787 || |||| || | |||||| ||||||||||||||| | || | |||||| Sbjct 2138 TAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTTT 2079 Query 1788 GGAATTGAAATCTAGATGGCCGCTTAAGTAATTATGTGGGCCTAATGCACGAGCCCA 1844 |||||| |||| | | || ||| ||| || ||| ||| ||||| ||||||||| Sbjct 2078 GGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCA 2022 >seq22495 Length=567 Score = 77.0 bits (84), Expect = 5e-11 Identities = 156/232 (67%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 1608 TCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATCTTTCTTGGCTTGCCGTA 1667 |||||||||||| || ||||| | | || || | |||||| | ||| || ||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1668 CTTGCAATTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTT 1727 ||| ||| | |||||| | || || || | || | | || ||||| | Sbjct 308 CTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1728 TAGGTAATGGGGTGTGACATCATCGATGACGTTATACTCAGCTTCGTCTGAGTAGACCCG 1787 || |||| || | || |||||||||||||||||| || || | |||||| Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 189 Query 1788 GGAATTGAAATCTAGATGGCCGCTTAAGTAATTATGTGGGCCTAATGCACGA 1839 |||||| ||||| | | || ||| ||| || ||||||||||||| |||| Sbjct 188 GGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8452752959560