Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_016574.1 Length=2649 Score E Sequences producing significant alignments: (Bits) Value seq3283 111 3e-21 seq3439 105 1e-19 seq54129 93.3 7e-16 seq22495 89.7 9e-15 seq5745 86.0 1e-13 seq1993 86.0 1e-13 seq33 84.2 4e-13 seq4295 78.8 2e-11 seq35612 77.0 5e-11 >seq3283 Length=49157 Score = 111 bits (122), Expect = 3e-21 Identities = 199/289 (69%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 1596 TCCAGGATTGCATAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTA 1655 |||||||||||| || ||||| ||| || || |||||||||||||| || || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1656 CTTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTT 1715 ||| ||||| |||||||| | || || || | || | | | ||||| | Sbjct 2221 CTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1716 TAGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACCCG 1775 || || | ||| ||| || ||||||||||||||| | | ||||||||| Sbjct 2161 TAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 2102 Query 1776 GGAATTGAAATC--TAAATGGCCACTCAAGTAATTATGTGGGCCTAATGCTCTAGCCCAC 1833 |||||| ||||| ||||| || | | ||| || ||||||||||||| | |||||| Sbjct 2101 GGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 2044 Query 1834 ATCGTCTTACCAGTTCGAGAATCACCTTCAACTATTATACTTATGGGCC 1882 || || || ||| || ||||||| || || || ||||||| Sbjct 2043 GCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq3439 Length=62978 Score = 105 bits (116), Expect = 1e-19 Identities = 199/289 (69%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 1596 TCCAGGATTGCATAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTA 1655 |||| ||||||| || ||||| ||| || || |||||||||||||| || || ||||| Sbjct 961 TCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTA 902 Query 1656 CTTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTT 1715 ||| |||| ||||||| | || || || | || | | | ||||| | Sbjct 901 CTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 842 Query 1716 TAGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACCCG 1775 || || | ||| |||||||||||||||||||||| | | ||||||||| Sbjct 841 TAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 782 Query 1776 GGAATTGAAATC--TAAATGGCCACTCAAGTAATTATGTGGGCCTAATGCTCTAGCCCAC 1833 |||||| ||||| ||||| ||| | | ||| || ||||||||||||| | |||||| Sbjct 781 GGAATTAAAATCCATAAATC-CCATT-ATGTAGTTGTGTGGGCCTAATGAACGAGCCCAT 724 Query 1834 ATCGTCTTACCAGTTCGAGAATCACCTTCAACTATTATACTTATGGGCC 1882 || || || ||| || ||||||| || || || ||||||| Sbjct 723 GCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 675 >seq54129 Length=2260 Score = 93.3 bits (102), Expect = 7e-16 Identities = 195/289 (67%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 1596 TCCAGGATTGCATAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTA 1655 |||||||||||| || ||||| ||| || || ||||||||||||| || || ||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1656 CTTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTT 1715 ||| ||||| ||| || | | || || || | || | | | ||||| | Sbjct 2198 CTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAAT 2139 Query 1716 TAGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACCCG 1775 || || | ||| |||||| ||||||||||||||| || | ||||||||| Sbjct 2138 TAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTTT 2079 Query 1776 GGAATTGAAAT--CTAAATGGCCACTCAAGTAATTATGTGGGCCTAATGCTCTAGCCCAC 1833 |||||| |||| ||||| || | | ||| || ||| ||| ||||| | |||||| Sbjct 2078 GGAATTAAAATTCATAAAT--CCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCAT 2021 Query 1834 ATCGTCTTACCAGTTCGAGAATCACCTTCAACTATTATACTTATGGGCC 1882 || || || ||| || ||||||| || || || ||||||| Sbjct 2020 GCTGTTTTTCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1972 >seq22495 Length=567 Score = 89.7 bits (98), Expect = 9e-15 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 1596 TCCAGGATTGCATAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTA 1655 |||||||||||| || ||||| | | || || | |||||||||||| || || ||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1656 CTTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTT 1715 ||| ||||| |||||| | || || || | || | | || ||||| | Sbjct 308 CTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1716 TAGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACCCG 1775 || || | ||| || |||||||||||||||||| | | ||||||||| Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 189 Query 1776 GGAATTGAAATCTAAATGGCCACTCAAGTAATTATGTGGGCCTAATG 1822 |||||| ||||| ||| || | | ||| || ||||||||||||| Sbjct 188 GGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATG 142 >seq5745 Length=45059 Score = 86.0 bits (94), Expect = 1e-13 Identities = 193/289 (67%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 1597 CCAGGATTGCATAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTAC 1656 ||||||||||| | |||||| |||| || || |||||||||||||| || ||||||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1657 TTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTT 1716 || ||| |||||||||| ||| || || || || | | | || ||| || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1717 AGGTA---TTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACC 1773 | || | | ||| || ||||| |||||||||||| | | || || || Sbjct 43661 AAATAAGCTGGAGGGATG---TCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1774 CGGGAATTGAAATCTAAATGGCCACTCAAGTAATTATGTGGGCCTAATGCTCTAGCCCAC 1833 ||||| ||||| | | ||| | | ||||||||||| || || | | ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAA 43777 Query 1834 ATCGTCTTACCAGTTCGAGAATCACCTTCAACTATTATACTTATGGGCC 1882 | || ||||| ||| |||| | | ||| || || ||| ||| || Sbjct 43778 ACTGTTTTACCGATTCTAGAAGGTCTTGCAATAATAATGCTTTTGGACC 43826 >seq1993 Length=81530 Score = 86.0 bits (94), Expect = 1e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1594 TCTCCAGGATTGCATAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCG 1653 || ||||||||||| |||||||| |||| || || ||||||||||||| || |||||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1654 TACTTGCAATTGGACTGCCAAT 1675 ||||| ||| |||||||||| Sbjct 74346 TACTTTGCATTTGACTGCCAAT 74325 >seq33 Length=454124 Score = 84.2 bits (92), Expect = 4e-13 Identities = 191/286 (67%), Gaps = 1/286 (0%) Strand=Plus/Minus Query 1597 CCAGGATTGCATAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTAC 1656 ||||||||||| |||||||| |||| || || | |||||||||||| || || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1657 TTGCAATTGGACTGCCAATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTT 1716 || ||| |||||||| | || | || | || | | | || ||| || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1717 AGGTATTGCGGGCTGACATCATCGATGACGTTATACTCAACTTGATTTGAGTAGACCCGG 1776 | || || ||| ||||| |||||||||||| | | || ||||| | Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1777 GAATTGAAATCTAAATGGCCACTCAAGTAATTATGTGGGCCTAATGCTCTAGCCCACATC 1836 ||||| ||||| | | ||| | | |||||||||||| || || | | ||||| | Sbjct 403122 GAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAACT 403063 Query 1837 GTCTTACCAGTTCGAGAATCACCTTCAACTATTATACTTATGGGCC 1882 || || || ||| |||| ||||||| || || ||| |||||| Sbjct 403062 GT-TTTTCAATTCTAGAAGGTCCTTCAATAATAATGCTTTTGGGCC 403018 >seq4295 Length=67413 Score = 78.8 bits (86), Expect = 2e-11 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 1600 GGATTGCATAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTG 1659 |||||| | ||||||||| ||||||| ||||||||||||||| | || || ||||||||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1660 CAATTGGACTGCCAAT 1675 ||| || | ||||| Sbjct 46783 GCATTTGAGTTCCAAT 46768 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 5e-11 Identities = 128/185 (69%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 1491 ATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTGTTGATTGTCCAGGCTTTAAGTGA 1550 ||||||||||| || || |||| ||||| ||||| | | ||||| | ||| | Sbjct 1404 ATAGAGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 1463 Query 1551 TGAGTTTTCCTGCTTCTCCAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCATAG 1610 ||| || || | |||| ||| ||||||| | |||||||||||| || Sbjct 1464 TGAATTGGACTCCAAATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAG 1523 Query 1611 CACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAATTGGACTG 1670 ||||| ||| || || |||||||||||||| || || |||||||| |||| ||| Sbjct 1524 TACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTG 1583 Query 1671 CCAAT 1675 ||||| Sbjct 1584 CCAAT 1588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8360041221350