Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_016578.1 Length=2725 Score E Sequences producing significant alignments: (Bits) Value seq3283 91.5 3e-15 seq33 89.7 9e-15 seq1993 86.0 1e-13 seq3439 84.2 4e-13 seq22495 82.4 1e-12 seq77518 80.6 5e-12 seq4295 78.8 2e-11 >seq3283 Length=49157 Score = 91.5 bits (100), Expect = 3e-15 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1652 CCTGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACGGGTTTCCCGTA- 1710 || ||||||||||| ||||| ||| || ||||||||||||||||| ||||||||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1711 TTTGCAGTTACTTTGCCAGTCTCGTTGGGCCCCAACGAGTTCTTTCCAGTGCTTTAGCTT 1770 |||||| | | | |||| | ||| || || || |||| | || | ||||| | Sbjct 2220 TTTGCATTGGCCT-GCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1771 TAGGTAGTGCGGGGCAACGTCATCGATGACGTTGTATGCGACCTCGTTTGAGTAGACCCT 1830 || || | ||| | ||||| ||||||||||| || | || |||||||| | Sbjct 2161 TAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 2102 Query 1831 CGAGTTGAAGTCGAGGTGTCCACTGAGATAATTGTGGGGACCTAAAGCACGCGCCCA 1887 || || || || | ||| | | || ||||| || ||||| | ||| ||||| Sbjct 2101 GGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq33 Length=454124 Score = 89.7 bits (98), Expect = 9e-15 Identities = 233/348 (67%), Gaps = 12/348 (3%) Strand=Plus/Minus Query 1546 ATAGAGGGGAGATTCGAGGAAGACGAACCTCGCATTGTGAAGGGTCCACGAC--CGGAGT 1603 ||||||||| | |||| |||| ||| ||||| || | |||||||| | | | Sbjct 403408 ATAGAGGGGTG--TCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATT 403351 Query 1604 GCTGAGTTTTCCTCTTTCTCGAGGAAGTCTTTATAGCTGGACCCTT--CCCCTGGATTGC 1661 ||| ||| ||| | |||| ||| ||||||| || || |||| ||||||| Sbjct 403350 --TGAATTTGAATCTATATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGC 403293 Query 1662 AAAGCACGATTGATGGGATACCGCCTTTAATTTGAACGGGTTTCCCGTA-TTTGCAGTT- 1719 |||||||||| |||| || |||| |||||||||||| ||||| ||||| |||||| || Sbjct 403292 AAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTG 403233 Query 1720 ACTTTGCCAGTCTCGTTGGGCCCCAACGAGTTCTTTCCAGTGCTTTAGCTTTAGGTAGTG 1779 || ||||||| | || | || |||| | || | || ||| ||| || Sbjct 403232 AC--TGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGC 403175 Query 1780 CGGGGCAACGTCATCGATGACGTTGTATGCGACCTCGTTTGAGTAGACCCTCGAGTTGAA 1839 || | |||||||| |||||||| || | ||||| ||||| ||||| || || Sbjct 403174 TGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAA 403115 Query 1840 GTCGAGGTGTCCACTGAGATAATTGTGGGGACCTAAAGCACGCGCCCA 1887 || | || | | ||||| || ||||| || | ||| ||||| Sbjct 403114 ATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq1993 Length=81530 Score = 86.0 bits (94), Expect = 1e-13 Identities = 117/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 1649 TCCCCTGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACGGGTTTCCCG 1708 ||||| ||||||||||||||||| |||| || ||| ||||||||||||| ||||| ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1709 TA-TTTGCAGTT-ACTTTGCCAGTCTCGTTGGGCCCCAACGAGTTCTTTCCAGTGCTTTA 1766 || |||||| || || ||||| | ||||| || | |||| | || | || ||| Sbjct 74346 TACTTTGCATTTGAC--TGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTT 74289 Query 1767 GCTTTAGGTAGTGCGGGGCAACGTCATCGATGACGTTGTA 1806 ||| || || | |||||||| |||||||| || Sbjct 74288 TAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATA 74249 >seq3439 Length=62978 Score = 84.2 bits (92), Expect = 4e-13 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 1656 GATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACGGGTTTCCCGTA-TTTG 1714 |||||||||| ||||| ||| || ||||||||||||||||| ||||| ||||| |||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1715 CAGTTACTTTGCCAGTCTCGTTGGGCCCCAACGAGTTCTTTCCAGTGCTTTAGCTTTAGG 1774 | ||| ||||| | ||| || || || |||| | || | ||||| ||| Sbjct 896 C-GTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAA 838 Query 1775 TAGTGCGGGGCAACGTCATCGATGACGTTGTATGCGACCTCGTTTGAGTAGACCCTCGAG 1834 || | ||| | || |||||||||||||| || | || |||||||| | || Sbjct 837 TAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAA 778 Query 1835 TTGAAGTCGAGGTGTCCACTGAGATAATTGTGGGGACCTAAAGCACGCGCCCA 1887 || || || | ||| | | || ||||| || ||||| | ||| ||||| Sbjct 777 TTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq22495 Length=567 Score = 82.4 bits (90), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 1652 CCTGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACGGGTTTCCCGTA- 1710 || ||||||||||| ||||| | | || |||| |||||||||||| ||||| ||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1711 TTTGCAGTTACTTTGCCAGTCTCGTTGGGCCCCAACGAGTTCTTTCCAGTGCTTTAGCTT 1770 |||||| | | | |||||| || || || || |||| | || || ||||| | Sbjct 307 TTTGCATTGGCCT-GCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1771 TAGGTAGTGCGGGGCAACGTCATCGATGACGTTGTATGCGACCTCGTTTGAGTA 1824 || || | ||| | | ||||||||||||||| || | || |||||||| Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTA 195 >seq77518 Length=14724 Score = 80.6 bits (88), Expect = 5e-12 Identities = 126/177 (71%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 1650 CCCCTGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACGGGTTTCCCGT 1709 |||| ||||||||||| ||||| |||| || ||||||||||||||||| | ||| ||| Sbjct 2402 CCCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGT 2343 Query 1710 A-TTTGCAGTT-ACTTTGCCAGTCTCGTTGGGCCCCAACGAGTTCTTTCCAGTGCTTTAG 1767 | |||||| || || || |||| ||||| || || |||| | || | |||||| Sbjct 2342 ACTTTGCATTTGAC--TGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTT 2285 Query 1768 CTTTAGGTAGTGCGGGGCAACGTCATCGATGACGTTGTATGCGACCTCGTTTGAGTA 1824 ||| || || | || ||||| |||||||| || | ||||| ||||| Sbjct 2284 AATTAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTA 2228 >seq4295 Length=67413 Score = 78.8 bits (86), Expect = 2e-11 Identities = 113/157 (72%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 1651 CCCTGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACGGGTTTCCCGTA 1710 || ||||||| | ||||||||| ||||||| || |||||||||||| | ||||| ||||| Sbjct 46847 CCTTGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTA 46788 Query 1711 -TTTGCAGTTACTTTGCCAGTCTCGTTGGGCCCCAACGAGTTCTTTCCAGTGCTTTAGCT 1769 || ||| || || ||| | |||||| ||| ||| ||||| || | ||| || Sbjct 46787 CTTGGCATTTGAGTT-CCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCT 46729 Query 1770 TTAGGTAGTGCGGGGCAACGTCATCGATGACGTTGTA 1806 | ||| | | |||||||| || |||||||| Sbjct 46728 GCAAATAGGATAGAGATACGTCATCTATAACGTTGTA 46692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8603009914590