Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_016660.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq3283 118 2e-23 seq3439 113 8e-22 seq5745 96.9 6e-17 seq77518 95.1 2e-16 seq22495 95.1 2e-16 seq1993 91.5 3e-15 seq35612 86.0 1e-13 seq54129 78.8 2e-11 seq30129 78.8 2e-11 seq4104 78.8 2e-11 >seq3283 Length=49157 Score = 118 bits (130), Expect = 2e-23 Identities = 182/254 (72%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 1683 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1742 || ||||||||||| || | ||| |||| || |||||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1743 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1797 ||||||| |||| ||||| | | || || || | ||| | || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1798 -TGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCGTTACTGTACACC 1856 | | | | |||| ||||| || |||||||||||||| || || || |||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTAC-GT 2105 Query 1857 TTTGGGCTT-AGATC--TAAATGCCCACATAAATAGTTATGTGGGCCTAAAGACCTAGCC 1913 ||||| || | ||| ||||| |||| || ||||| ||||||||||| || | |||| Sbjct 2104 TTTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1914 CACATTGTCTTCCC 1927 || ||| ||||| Sbjct 2046 CATGCTGTTTTCCC 2033 >seq3439 Length=62978 Score = 113 bits (124), Expect = 8e-22 Identities = 181/254 (71%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 1683 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1742 || ||| ||||||| || | ||| |||| || |||||||||||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1743 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1797 ||||||| ||||| ||||| | | || || || | ||| | || | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1798 -TGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCGTTACTGTACACC 1856 | | | | |||| || ||||| |||||||||||||| || || || |||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTAC-GT 785 Query 1857 TTTGGGCTT-AGATC--TAAATGCCCACATAAATAGTTATGTGGGCCTAAAGACCTAGCC 1913 ||||| || | ||| ||||| |||| || ||||| ||||||||||| || | |||| Sbjct 784 TTTGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCC 727 Query 1914 CACATTGTCTTCCC 1927 || ||| ||||| Sbjct 726 CATGCTGTTTTCCC 713 >seq5745 Length=45059 Score = 96.9 bits (106), Expect = 6e-17 Identities = 175/249 (70%), Gaps = 8/249 (3%) Strand=Plus/Plus Query 1686 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1745 ||||||||||| | | ||| ||| || || ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1746 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTT--TAAAG-TGCTTGAGG 1802 |||| || || ||||| | | ||| || || ||||| | || ||| | | || | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1803 AAGT--GC-GGATCTACGTCATCAATGACGTTATACCAAGCGTCGTTACTGTACACCTTT 1859 || | || ||| | ||||||||||||||||||||| |||||||| || || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1860 GGGCTTAGATCTA-AATGCCCACATAAATAGTTATGTGGGCCTAAAGACCTAGCCCACAT 1918 | | | ||| | || ||||| || ||| |||||||| || || || | ||||| | Sbjct 43721 GAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCAAAC 43779 Query 1919 TGTCTTCCC 1927 ||| || || Sbjct 43780 TGTTTTACC 43788 >seq77518 Length=14724 Score = 95.1 bits (104), Expect = 2e-16 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1686 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1745 ||||||||||| || | ||| ||| || ||||||||||||||||||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1746 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGC---TTGAGG 1802 |||| || || || |||| | ||| || || | ||| | || | | ||| || | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1803 AAGT--GC-GGATCTACGTCATCAATGACGTTATACCAAGCGTCGTT 1846 || | || ||| || |||||||||||||||||||| |||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq22495 Length=567 Score = 95.1 bits (104), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 1683 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1742 || ||||||||||| || | ||| || | || |||| ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1743 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1797 ||||||| |||| ||||||| | || || || | ||| | || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1798 -TGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCGTTACTGTACACC 1856 | | | | |||| | |||||| |||||||||||||| || || || |||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTAC-GT 192 Query 1857 TTTGGGCTT-AGATCTAAATGCCCACATAAATAGTTATGTGGGCCTAAAGA 1906 ||||| || | ||| ||| || || ||||| ||||||||||| || Sbjct 191 TTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq1993 Length=81530 Score = 91.5 bits (100), Expect = 3e-15 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1686 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1745 ||||||||||| || | ||| ||| || ||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1746 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTT--TAAAG-TGCTTGAGG 1802 |||| || || ||||| | | ||| || | | ||| | || ||| | | || | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1803 AAGT--GC-GGATCTACGTCATCAATGACGTTATACCAAGCGTCGTT 1846 || | || ||| ||||||||||||||||||||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1683 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1742 || ||||||||||| || | ||| |||| || |||||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1743 TACTTTGTGTTGGATTGCCA 1762 ||||||| ||||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 168/242 (69%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 1683 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1742 || ||||||||||| || | ||| |||| || |||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1743 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTT--TAAAG-TGCTTG 1799 ||||||| |||| || |||| || || || | ||| | || ||| | | ||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1800 AGGA---AGTGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCGTTACTGTACACC 1856 | | | | |||| || || || |||||||||||||| | || || ||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA-TGT 2082 Query 1857 TTTGGGCTTAGA--TC-TAAATGCCCACATAAATAGTTATGTGGGCCTAAAGACCTAGCC 1913 ||||| ||| | || ||||| |||| || ||||| ||| ||| ||| || | |||| Sbjct 2081 TTTGGAATTAAAATTCATAAAT-CCCA-TTATGTAGTTGTGTTGGCATAATGAACGAGCC 2024 Query 1914 CA 1915 || Sbjct 2023 CA 2022 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1683 GGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCG 1742 || ||||||||||| || | ||| |||| || |||||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1743 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTT 1798 ||||||| |||| ||||| | | || || || | ||| | || | | ||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 >seq4104 Length=64936 Score = 78.8 bits (86), Expect = 2e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1682 GGGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCC 1741 ||| ||||||||||| || | ||| |||| || |||||||||||||||||||| || || Sbjct 20831 GGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCC 20772 Query 1742 GTACTTTG 1749 |||||||| Sbjct 20771 GTACTTTG 20764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8650964261940