Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_016984.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq3439 105 1e-19 seq3283 102 1e-18 seq5745 100 5e-18 seq77518 96.9 6e-17 seq22495 96.9 6e-17 seq35612 91.5 3e-15 seq4104 91.5 3e-15 seq33 91.5 3e-15 seq3059 84.2 4e-13 seq442 84.2 4e-13 seq30129 82.4 1e-12 seq1993 82.4 1e-12 seq80468 80.6 5e-12 >seq3439 Length=62978 Score = 105 bits (116), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 1662 ATCCAAGAACTCTTTATAGCTAGAATTG-GGTCCTGGATTGCAGAGGAAGATAGCGGGAA 1720 ||| |||||| ||||||| | |||| ||||| ||||||| || | |||| |||| Sbjct 991 ATCTAAGAACGTTTTATAGG-ATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAA 933 Query 1721 TTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGG 1780 | || ||||||||||||||||| |||||||| |||| ||||| ||||| | | || | Sbjct 932 TCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTG 873 Query 1781 CCCCCATGAATTCCTTAAAGTGCT------TTAGATAATGCGGATCAACGTCATTAATGA 1834 | || | ||| | | | | |||| ||| ||||| |||| || |||| |||| Sbjct 872 CGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGA 813 Query 1835 CGTTATACCAGGCGTCGTT 1853 |||||||||| || || || Sbjct 812 CGTTATACCATGCATCATT 794 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1662 ATCCAAGAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1721 |||||||||| ||||||| || ||||| |||||||| || | |||| ||||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1722 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGC 1781 || ||||||||||||||||| || ||||| |||| |||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1782 CCCCATGAATTCCTTAAAGTGCT------TTAGATAATGCGGATCAACGTCATTAATGAC 1835 || | ||| | | | | |||| ||| ||||| |||| ||||| | ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1836 GTTATACCAGGCGTCGTT 1853 ||||||||| || || || Sbjct 2131 GTTATACCATGCATCATT 2114 >seq5745 Length=45059 Score = 100 bits (110), Expect = 5e-18 Identities = 144/201 (72%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 1662 ATCCAAGAACTCTTTATA-GCTAGAATTGGGTCCT--GGATTGCAGAGGAAGATAGCGGG 1718 ||| |||||| ||||||| | || | ||| || |||||||| | | |||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1719 AATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTG 1778 ||| |||||||||||||||||||| || ||||| |||| || || ||||| | | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1779 GGCCCCCATGAATTCCTTAAAGTGCT------TTAGATAATGCGGATCAACGTCATTAAT 1832 || || ||||| | | | | || | ||| |||| ||| | ||||| ||| Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAAT 43686 Query 1833 GACGTTATACCAGGCGTCGTT 1853 |||||||||||| |||||||| Sbjct 43687 GACGTTATACCATGCGTCGTT 43707 >seq77518 Length=14724 Score = 96.9 bits (106), Expect = 6e-17 Identities = 143/201 (71%), Gaps = 9/201 (4%) Strand=Plus/Minus Query 1662 ATCCAAGAACTCTTTATA-GCTAGAATTGGGTCCT--GGATTGCAGAGGAAGATAGCGGG 1718 ||||||||| ||||||| | || | ||| || |||||||| || | |||| || Sbjct 2434 ATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGG 2375 Query 1719 AATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTG 1778 ||| || |||||||||||||||| ||| |||| |||| || || || |||| | ||| Sbjct 2374 AATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTG 2315 Query 1779 GGCCCCCATGAATTCCTTAAAGTGCT------TTAGATAATGCGGATCAACGTCATTAAT 1832 || || | ||| | | | | |||| ||| |||| ||| || |||| ||| Sbjct 2314 TGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAAT 2255 Query 1833 GACGTTATACCAGGCGTCGTT 1853 |||||||||||| |||||||| Sbjct 2254 GACGTTATACCACGCGTCGTT 2234 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1662 ATCCAAGAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1721 ||| ||||| ||||||| ||| ||||| |||||||| || | |||| |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1722 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGC 1781 || | ||||||||||||||| |||||||| |||| |||| ||||||| | || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1782 CCCCATGAATTCCTTAAAGTGCT------TTAGATAATGCGGATCAACGTCATTAATGAC 1835 || | ||| | | | | |||| ||| ||||| |||| | ||||| ||||| Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1836 GTTATACCAGGCGTCGTT 1853 ||||||||| || || || Sbjct 218 GTTATACCATGCATCATT 201 >seq35612 Length=1588 Score = 91.5 bits (100), Expect = 3e-15 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1662 ATCCAAGAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1721 ||||||||| ||||||| ||| ||||| |||||||| || | |||| ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1722 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCA 1769 || ||||||||||||||||| |||||||| |||| ||||| ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 91.5 bits (100), Expect = 3e-15 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 1662 ATCCAAGAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1721 |||||||||| ||||||| ||| |||||| |||||||| || | |||| ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1722 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTG 1756 || ||||||||||||||||| |||||||| |||| Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 20764 >seq33 Length=454124 Score = 91.5 bits (100), Expect = 3e-15 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1693 CCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTAT 1752 || |||||||| || | |||| ||||| || | ||||||||||||||| |||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1753 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1806 |||| || || ||||||| | || | || | ||| | | | | || | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1807 AGATAATGCGGATCAACGTCATTAATGACGTTATACCAGGCGTCGTT 1853 | |||| ||| ||||||| ||||||||||||||| |||||||| Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq3059 Length=182465 Score = 84.2 bits (92), Expect = 4e-13 Identities = 125/178 (70%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 1662 ATCCAAGAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1721 |||||||||| ||||| | ||| ||||| |||||||| || | |||| ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1722 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGC 1781 || ||||||||||||| ||| |||||||| |||| |||| | ||||| | || || Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGC 20328 Query 1782 CCCCATGAATTCCTTAAAGTGCT------TTAGATAATGCGGATCAACGTCATTAATG 1833 || | ||| | | | | |||| ||| ||||| |||| ||||| | |||| Sbjct 20327 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq442 Length=237535 Score = 84.2 bits (92), Expect = 4e-13 Identities = 132/188 (70%), Gaps = 7/188 (4%) Strand=Plus/Plus Query 1662 ATCCAAGAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1721 ||||||||| ||||||| |||| ||||| |||||||| || |||| ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1722 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGC 1781 | |||||||||||||||| |||||||| |||| |||| ||| ||| | ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1782 CCCCATGAATTCCTTAAAGTGCT------TTAGATAATGCGGATCAACGTCATTAATGAC 1835 || | ||| | | | | |||| ||| ||||| || | ||||| | || || Sbjct 22870 GCCTACGAACTGTTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAAC 22928 Query 1836 GTTATACC 1843 |||||||| Sbjct 22929 GTTATACC 22936 >seq30129 Length=3650 Score = 82.4 bits (90), Expect = 1e-12 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1662 ATCCAAGAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1721 |||||||||| ||| ||| ||| ||||| |||||||| || | |||| ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1722 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCA 1769 || ||||||||||||||| | |||||||| |||| |||| ||||| Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450 >seq1993 Length=81530 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1693 CCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTAT 1752 || |||||||| || | |||| ||||| || |||||||||||||||| || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1753 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1806 |||| || || ||||| | | ||| || | | ||| | | | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1807 AGATAATGCGGATCAACGTCATTAATGACGTTATACCAGGCGTCGTT 1853 | |||| ||| ||||||| ||||||||||||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq80468 Length=4946 Score = 80.6 bits (88), Expect = 5e-12 Identities = 135/194 (70%), Gaps = 11/194 (6%) Strand=Plus/Plus Query 1662 ATCCAAGAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAAT 1721 || |||||| ||||||| ||| ||||| ||||||| || | |||| ||||| Sbjct 4238 ATTCAAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 4297 Query 1722 TCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCA--GTCCCTTTGG 1779 ||| |||||||| ||||| || |||||||| ||||| |||| | ||| || | || Sbjct 4298 TCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATTGGCCTACCATTGTGC---TGT 4354 Query 1780 GCCCCCATGAATTCCTTAAAGTGCTT------TAGATAATGCGGATCAACGTCATTAATG 1833 || || | ||| | | | | ||||| || ||||| | | ||||| || ||| Sbjct 4355 GCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTTGAAGGGACGTCGTTGATG 4414 Query 1834 ACGTTATACCAGGC 1847 ||||||||||| || Sbjct 4415 ACGTTATACCATGC 4428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8673342957370