Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_016999.1 Length=2660 Score E Sequences producing significant alignments: (Bits) Value seq5745 122 1e-24 seq5493 111 3e-21 seq33 107 3e-20 seq22495 98.7 2e-17 seq490 98.7 2e-17 seq3283 95.1 2e-16 seq4295 89.7 9e-15 seq1993 89.7 9e-15 seq54129 87.8 3e-14 seq77518 82.4 1e-12 seq3439 80.6 4e-12 seq1010 78.8 2e-11 seq6801 77.0 5e-11 >seq5745 Length=45059 Score = 122 bits (134), Expect = 1e-24 Identities = 260/383 (68%), Gaps = 18/383 (5%) Strand=Plus/Plus Query 1446 TTGAACCTTGATAGAGGGGGGAGTTGAGGAAGACGAATTGCGCATTGTGTATCGTCCAC- 1504 ||||| | | |||||| |||| || || |||| |||| ||||| |||| ||| || Sbjct 43423 TTGAATCCT-ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACG 43481 Query 1505 -TGTCTAAGTGATGCGTTTTCTTCTTTGTCGAGGAACGATTTATAG-------CTGGCGC 1556 | ||||| | || ||| ||| | || | ||||| |||||| |||| | Sbjct 43482 ATTTCTAATT--TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACC 43539 Query 1557 CCTCGCCAGGATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCC 1616 || |||||||||||| ||| || ||||| || |||||||||||||||||||| || | Sbjct 43540 CC----CAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGC 43595 Query 1617 CGTA-TTTGCAATTTGATTGCCAGTCCTTTTGAGCACCTATCAATTCTTTCCAGTGCTTT 1675 |||| ||||| |||||| ||||| | ||| || ||||| || | || | || ||| Sbjct 43596 CGTACTTTGC-ATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTT 43654 Query 1676 AACTTTAGATATTGCGGTGCGATGTCATCTATCACGTTGTACTGCACATCATTTGAATAG 1735 ||| ||| || | ||||||||| || ||||| ||| | || || || || Sbjct 43655 TTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTAT 43714 Query 1736 ACCTTTGAATTGAAATCGAGGTGACCACTCAAGTAATTATGGGACCCCAATGCACGTGCC 1795 || ||||| ||||| | || | | |||||||| | ||||| | ||||||| Sbjct 43715 GTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCC 43774 Query 1796 CACATGGTCTTGCCCGTTCGAGA 1818 || | || || || ||| ||| Sbjct 43775 CAAACTGTTTTACCGATTCTAGA 43797 >seq5493 Length=32325 Score = 111 bits (122), Expect = 3e-21 Identities = 126/163 (77%), Gaps = 11/163 (7%) Strand=Plus/Minus Query 1565 GGATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTG 1624 |||||||| | |||||| |||| |||||||| ||||||||||||||| || ||||| || Sbjct 31559 GGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTTC 31500 Query 1625 CAATTTGATTGCCAGTCCTTTTGAGCACCT-ATCAATTCTTTCCAGTGCTTTAACTTT-- 1681 |||||||||||||| | ||||| |||| | | |||||||| |||| |||| Sbjct 31499 ACATTTGATTGCCAGTTGTATTGAG-ACCTAAGTAGCTCTTTCCA--GCTT---CTTTGC 31446 Query 1682 AGATATTGCGGTGCGATGTCATCTATCACGTTGTAC--TGCAC 1722 |||||| ||||| | |||||| || | ||||||| ||||| Sbjct 31445 AGATATGTCGGTGATACGTCATCAATGATGTTGTACCATGCAC 31403 >seq33 Length=454124 Score = 107 bits (118), Expect = 3e-20 Identities = 237/348 (68%), Gaps = 12/348 (3%) Strand=Plus/Minus Query 1457 TAGAGGGGGGAGTTGAGGAAGACGAATTGCGCATTGTGTATCGTCCAC--TGTCTAAGTG 1514 || || |||| || || |||| ||||| ||||| |||| |||||| | || || | Sbjct 403409 TATAGAGGGGTGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATT- 403351 Query 1515 ATGCGTTTTCTTCTTTGTCGAGGAACGATTTATAGCTGGCGCC-CTCG---CCAGGATTG 1570 || ||| ||| | |||| ||||| |||||| | | | || | ||||||||| Sbjct 403350 -TGAATTTGAATCTATATCGAAGAACGCTTTATAA--GACAACTCTGGACCCCAGGATTG 403294 Query 1571 CAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTA-TTTGCAATT 1629 |||||||| || ||||| || || | ||||||||||||||| || ||||| ||||| ||| Sbjct 403293 CAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGC-ATT 403235 Query 1630 TGATTGCCAGTCCTTTTGAGCACCTATCAATTCTTTCCAGTGCTTTAACTTTAGATATTG 1689 ||| ||||||| || | |||| || | || | || ||| ||| ||| Sbjct 403234 TGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGC 403175 Query 1690 CGGTGCGATGTCATCTATCACGTTGTACTGCACATCATTTGAATAGACCTTTGAATTGAA 1749 || | || |||||| || ||||| ||| | | || || || || | ||||| || Sbjct 403174 TGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAA 403115 Query 1750 ATCGAGGTGACCACTCAAGTAATTATGGGACCCCAATGCACGTGCCCA 1797 ||| | || | | ||||||||| | ||||| | ||||||||| Sbjct 403114 ATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 1562 CCAGGATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTA- 1620 |||||||||||||| || || | | | || || | ||||||||||||||| || ||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1621 TTTGCAATTTGATTGCCAGTCCTTTTGAGCACCTATCAATTCTTTCCAGTGCT--TTAAC 1678 ||||| ||| | ||||||| || || |||| || | || || |||| |||| Sbjct 307 TTTGC-ATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA- 250 Query 1679 TTTAGATATTGCGGTGCGATGTCATCTATCACGTTGTACTGCACATCATTTGAATAGACC 1738 ||| ||| | ||| | ||||||||| || ||||| ||| |||||||||| || Sbjct 249 -TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 191 Query 1739 TTTGAATTGAAATC 1752 || ||||| ||||| Sbjct 190 TTGGAATTAAAATC 177 >seq490 Length=137872 Score = 98.7 bits (108), Expect = 2e-17 Identities = 228/337 (68%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 1456 ATAGAGGGGGGAGTTGAGGAAGACGAATTGCGCATTGTGTATCGTCCACTGTCTAAGTGA 1515 ||||| ||||| |||| ||| ||||| ||||| |||||||||| ||| | | Sbjct 70732 ATAGAAGGGGGTGTTGGCGAAATAGAATTCTGCATTTGCAATCGTCCACTCTCTTATATA 70673 Query 1516 TGCGTTTTCTTCTTTGTCGAGGAACGATTTATAGCTGGCGCC----CTCGCCAGGATTGC 1571 || || | | || || | ||| |||||||| | ||| ||| | | ||||| Sbjct 70672 CGCATTAACATTCTTATCCAAGAATGATTTATAAGAGTAGCCTGTACTCTC-ATTATTGC 70614 Query 1572 AAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTGCAATTTG 1631 | || ||||| |||| ||||||||||||||||| | |||||| | ||||| ||| | Sbjct 70613 ATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGAATCAG 70554 Query 1632 ATTGCCAGTCCTTTTGAGCACCTATCAATTCTTTCCAGTGCTTTAACTTTAGATATTGCG 1691 ||||||| | | || || || | || |||| ||||| | ||| || | Sbjct 70553 CTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGATGCTG 70494 Query 1692 GTGCGATGTCATCTATCACGTTGTAC--TGCACATCATTTGAATAGACCTTTGAATTGAA 1749 | | || ||||||||| ||||| ||| || || ||||| ||| | |||| |||||| Sbjct 70493 GAGGGACGTCATCTATGACGTTATACCATG-AC-TCATTGGAAAATGTCTTTCTATTGAA 70436 Query 1750 ATCGAGGTGACCACTCAAGTAATTATG-GGACCCCAA 1785 ||| | || | ||||||||||| |||||| || Sbjct 70435 ATCCATAACGCCCATAAAGTAATTATGTGGACCCAAA 70399 >seq3283 Length=49157 Score = 95.1 bits (104), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 1562 CCAGGATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTA- 1620 |||||||||||||| || || | ||| || || ||||||||||||||||| |||||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1621 TTTGCAATTTGATTGCCAGTCCTTTTGAGCACCTATCAATTCTTTCCAGTGCT--TTAAC 1678 ||||| ||| | ||||| | || || |||| || | || | |||| |||| Sbjct 2220 TTTGC-ATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA- 2163 Query 1679 TTTAGATATTGCGGTGCGATGTCATCTATCACGTTGTACTGCACATCATTTGAATAGACC 1738 ||| ||| | ||| | || ||| || || ||||| ||| |||||||||| || Sbjct 2162 -TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1739 TTTGAATTGAAATC 1752 || ||||| ||||| Sbjct 2103 TTGGAATTAAAATC 2090 >seq4295 Length=67413 Score = 89.7 bits (98), Expect = 9e-15 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 1565 GGATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTG 1624 |||||| | ||||| || ||||||||||| |||||||||||| |||| || ||||| ||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1625 CAATTTGATTGCCAGTCCTTTTGAGCACCTATCAATTCTTTCCAGTGCTTTAACTTTAGA 1684 |||||| | ||| | | || || | || | ||||| || | ||| || | | Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1685 TATTGCGGTGCGATGTCATCTATCACGTTGTACTGCACATCATTTGAATAGACCTTTGAA 1744 || | | | ||||||||| ||||||||| ||| ||| ||| | || ||| Sbjct 46723 TAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGAA 46664 Query 1745 TTGAAATCGAGGTGACCACTCAAGTAATTATGGGACCCCAATGCACGTGCCCACATGGTC 1804 || ||||| | | || | | ||| ||||| | | || | |||||||| || ||| Sbjct 46663 TTAAAATCCATGAAGCCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGTC 46604 Query 1805 TT 1806 || Sbjct 46603 TT 46602 >seq1993 Length=81530 Score = 89.7 bits (98), Expect = 9e-15 Identities = 178/261 (68%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 1559 TCGCCAGGATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCG 1618 || ||||||||||||||||| || ||||| || || |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1619 TA-TTTGCAATTTGATTGCCAGTCCTTTTGAGCACCTATCAATTCTTTCCAGTGCTTTAA 1677 || ||||| |||||| ||||| | ||| || | || || | || | || ||| Sbjct 74346 TACTTTGC-ATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1678 CTTTAGATATTGCGGTGCGATGTCATCTATCACGTTGTACTGCACATCATTTGAATAGAC 1737 ||| ||| || | || |||||| || ||||| ||| | | | || || || Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGT 74228 Query 1738 CTTTGAATTGAAATCGAGGTGACCACTCAAGTAATTATGGGACCCCAATGCACGTGCCCA 1797 || ||||| ||||| | || | | |||||||| | ||||| | ||||| ||| Sbjct 74227 TTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCA 74168 Query 1798 CATGGTCTTGCCCGTTCGAGA 1818 | || || || ||| ||| Sbjct 74167 AACTGTTTTACCGATTCTAGA 74147 >seq54129 Length=2260 Score = 87.8 bits (96), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 1562 CCAGGATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTA- 1620 |||||||||||||| || || | ||| || || ||||||||||||| ||| || ||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1621 TTTGCAATTTGATTGCCAGTCCTTTTGAGCACCTATCAATTCTTTCCAGTGCTT--TAAC 1678 |||||| || | || |||| | || || |||| || | || | ||||| ||| Sbjct 2197 TTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA- 2140 Query 1679 TTTAGATATTGCGGTGCGATGTCATCTATCACGTTGTACTGCACATCATTTGAATAGACC 1738 ||| ||| | ||| | || || || || ||||| ||| ||||||||||| || Sbjct 2139 -TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTT 2081 Query 1739 TTTGAATTGAAAT 1751 || ||||| |||| Sbjct 2080 TTGGAATTAAAAT 2068 >seq77518 Length=14724 Score = 82.4 bits (90), Expect = 1e-12 Identities = 162/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1562 CCAGGATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTA- 1620 |||||||||||||| || || ||||| || || |||||||||||||||| || |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1621 TTTGCAATTTGATTGCCAGTCCTTTTGAGCACCTATCAATTCTTTCCAGTGCTTTAACTT 1680 ||||| |||||| || |||| ||| || |||| || | || | |||||| | Sbjct 2340 TTTGC-ATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1681 TAGATATTGCGGTGCGATGTCATCTATCACGTTGTACTGCACATCATTTGAATAGACCTT 1740 || ||| || | || ||||| || ||||| ||| | | || || || || || Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTT 2222 Query 1741 TGAATTGAAATCGAGGTGACCACTCAAGTAATTATGGGACCCCAATGCACGTGCCCA 1797 |||| ||||| | || | | |||||||| | ||||| ||||||||| Sbjct 2221 CAAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCA 2165 >seq3439 Length=62978 Score = 80.6 bits (88), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 1562 CCAGGATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTA- 1620 ||| |||||||||| || || | ||| || || ||||||||||||||||| || ||||| Sbjct 960 CCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTAC 901 Query 1621 TTTGCAATTTGATTGCCAGTCCTTTTGAGCACCTATCAATTCTTTCCAGTGCT--TTAAC 1678 ||||| || | ||||| | || || |||| || | || | |||| |||| Sbjct 900 TTTGC-GTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA- 843 Query 1679 TTTAGATATTGCGGTGCGATGTCATCTATCACGTTGTACTGCACATCATTTGAATAGACC 1738 ||| ||| | ||| | || ||||| || ||||| ||| |||||||||| || Sbjct 842 -TTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1739 TTTGAATTGAAATC 1752 || ||||| ||||| Sbjct 783 TTGGAATTAAAATC 770 >seq1010 Length=204159 Score = 78.8 bits (86), Expect = 2e-11 Identities = 170/253 (67%), Gaps = 1/253 (0%) Strand=Plus/Minus Query 1566 GATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTGC 1625 ||||||| ||||| || ||| |||||| ||||||||| |||||| || ||||| || Sbjct 40914 GATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTACTTAG 40855 Query 1626 AATTTGATTGCCAGTCCTTTTGAGCACCTATCAATTCTTTCCAGTGCTTTAACTT-TAGA 1684 |||||||||||| | | || | | || | |||||||| || ||| || | | Sbjct 40854 CATTTGATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTTTTTTTGCAAA 40795 Query 1685 TATTGCGGTGCGATGTCATCTATCACGTTGTACTGCACATCATTTGAATAGACCTTTGAA 1744 || | | | ||||||||| || || ||| ||| ||| ||| | |||||| Sbjct 40794 TAGGATAGAGACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGATTTTGAA 40735 Query 1745 TTGAAATCGAGGTGACCACTCAAGTAATTATGGGACCCCAATGCACGTGCCCACATGGTC 1804 || ||||| | | || | | ||| ||||| | || || | ||| |||| || ||| Sbjct 40734 TTAAAATCTATGAAGCCCATTATGTAGTTATGTGGGCCTAAAGATCGTTCCCATATTGTC 40675 Query 1805 TTGCCCGTTCGAG 1817 || || ||| || Sbjct 40674 TTTCCAATTCTAG 40662 Score = 77.0 bits (84), Expect = 5e-11 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1562 CCAGGATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTAT 1621 || |||||||| ||||| || ||||||||| | |||||||||||||| | || ||||| Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTAC 36543 Query 1622 TTGCAATTTGATTGCCA 1638 ||| || ||||||||| Sbjct 36544 TTGACATGTGATTGCCA 36560 >seq6801 Length=49729 Score = 77.0 bits (84), Expect = 5e-11 Identities = 144/205 (70%), Gaps = 19/205 (9%) Strand=Plus/Plus Query 1446 TTGAACCTTGATAGAGGGGGGAGTTGAGGAAGACGAATTGCGCATTGTGTATCGTCCAC- 1504 ||||| | | |||||||||| ||||| ||| ||||| ||||| ||| ||||| Sbjct 46977 TTGAATCCT-ATAGAGGGGGT-GTTGACGAAATGGAATTTTGCATTTTGTCAAGTCCAAG 47034 Query 1505 -TGTCTAAGTGATGCGTTTTCTTCTTTGTCGAGGAACGATTTATAG-------CTGGCGC 1556 | || || | || ||| | | || | ||||| ||||||| |||| | Sbjct 47035 ATTTCCAATT--TGAATTTGAATATAAATCCAAGAACGCTTTATAGGACAAATCTGGACC 47092 Query 1557 CCTCGCCAGGATTGCAAAGCACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCC 1616 ||| |||| ||||||| || || ||||| || || ||||||||||||||||| || | Sbjct 47093 CCT----AGGAGTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGGTTTGC 47148 Query 1617 CGTA-TTTGCAATTTGATTGCCAGT 1640 |||| ||||| |||||| ||| ||| Sbjct 47149 CGTACTTTGC-ATTTGACTGCTAGT 47172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8395207742740