Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_017000.1 Length=2656 Score E Sequences producing significant alignments: (Bits) Value seq5745 111 3e-21 seq33 102 1e-18 seq5493 98.7 2e-17 seq4295 91.5 2e-15 seq1993 86.0 1e-13 seq1010 86.0 1e-13 seq77518 84.2 4e-13 seq6801 80.6 4e-12 seq490 77.0 5e-11 >seq5745 Length=45059 Score = 111 bits (122), Expect = 3e-21 Identities = 190/271 (70%), Gaps = 15/271 (6%) Strand=Plus/Plus Query 1490 ATAGAGGGGGGAGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCA-GTTTCGTAATG 1548 |||||| |||| || || |||| |||| ||||| |||| ||| | | || |||| Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1549 CTGTGTTTTCCTCTTTGTCGAGGAAATCTTTATAA-------CTGGACCCTTCGCCAGGA 1601 || ||| ||| | || | ||| |||||||| |||||||| |||||| Sbjct 43492 -TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCC----CCAGGA 43546 Query 1602 TTGCAAAGCACGATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCGTA-TTTGCA 1660 ||||||| |||||| |||| || ||||||||||||||||| || |||||||| ||||| Sbjct 43547 TTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGC- 43605 Query 1661 ATTTGATTGCCAGTCCTTTTGAGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTTAGATA 1720 |||||| ||||| | ||| || || || || | || | || ||| ||| ||| Sbjct 43606 ATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATA 43665 Query 1721 GGTGGGCGCGATGTCGTCTATGATGTTGTAC 1751 | || | |||||| || |||| ||| ||| Sbjct 43666 AGCTGGAGGGATGTCATCAATGACGTTATAC 43696 >seq33 Length=454124 Score = 102 bits (112), Expect = 1e-18 Identities = 139/188 (74%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 1491 TAGAGGGGGGAGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCA-GTTTCGTAATGC 1549 || || |||| || || |||| ||||| |||||| |||| ||||| | || ||| Sbjct 403409 TATAGAGGGGTGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATT- 403351 Query 1550 TGTGTTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGACCCTT--CGCCAGGATTGCAA 1607 || ||| ||| | |||| ||| |||||||| || || | |||||||||||| Sbjct 403350 TGAATTTGAATCTATATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAA 403291 Query 1608 AGCACGATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCGTA-TTTGCAATTTGA 1666 |||||||| |||| || || | |||||||||||| || || ||||| ||||| |||||| Sbjct 403290 AGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGC-ATTTGA 403232 Query 1667 TTGCCAGT 1674 ||||||| Sbjct 403231 CTGCCAGT 403224 >seq5493 Length=32325 Score = 98.7 bits (108), Expect = 2e-17 Identities = 121/161 (75%), Gaps = 7/161 (4%) Strand=Plus/Minus Query 1599 GGATTGCAAAGCACGATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCGTATTTG 1658 |||||||| | ||| || ||| ||| |||| |||||||||||| || || ||||| || Sbjct 31559 GGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTTC 31500 Query 1659 CAATTTGATTGCCAGTCCTTTTGAGCCCCAATCAATTCTTTCCAG-TGCTTTAGCTTTAG 1717 |||||||||||||| | ||||| || || | ||||||||| | |||| || || Sbjct 31499 ACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAGCTTCTTT-GC---AG 31444 Query 1718 ATAGGTGGGCGCGATGTCGTCTATGATGTTGTAC--TGCAC 1756 ||| || || | | ||| || |||||||||||| ||||| Sbjct 31443 ATATGTCGGTGATACGTCATCAATGATGTTGTACCATGCAC 31403 >seq4295 Length=67413 Score = 91.5 bits (100), Expect = 2e-15 Identities = 179/260 (69%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 1496 GGGGGAGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCAGTTTCGT-AATGCTGTGT 1554 ||||| || | ||||| ||||| |||||| || ||||| |||| | || | | | Sbjct 46949 GGGGGTGTCGGCGAAGAAGAATTCTGCATTTCCTAATGTCCA-TTTCTTCAAAGTTAAAT 46891 Query 1555 TTTCCTCTTTGTCGAGGAAATCTTTATAACTGGACCCT--TCGCCA-GGATTGCAAAGCA 1611 || |||| ||||| ||| ||||||| || || | || |||||| | |||| Sbjct 46890 TTATATCTTGTTCGAGAAAAGCTTTATACGAACACTCTGGTGTCCTTGGATTGTAGAGCA 46831 Query 1612 CGATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCGTATTTGCAATTTGATTGCC 1671 ||||| ||||||| || |||||||||||| | || || ||||| ||| |||||| | || Sbjct 46830 CGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTGGCATTTGAGTTCC 46771 Query 1672 AGTCCTTTTGAGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTTAGATAGGTGGGCGCGA 1731 | | | || ||| |||| | ||||| || | ||| || | ||||| | | | Sbjct 46770 AATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAATAGGATAGAGATA 46711 Query 1732 TGTCGTCTATGATGTTGTAC 1751 ||| ||||| | ||||||| Sbjct 46710 CGTCATCTATAACGTTGTAC 46691 >seq1993 Length=81530 Score = 86.0 bits (94), Expect = 1e-13 Identities = 69/81 (85%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 1593 TCGCCAGGATTGCAAAGCACGATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCG 1652 || |||||||||||||||||||| |||| || || ||||||||||||| || |||||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1653 TA-TTTGCAATTTGATTGCCA 1672 || ||||| |||||| ||||| Sbjct 74346 TACTTTGC-ATTTGACTGCCA 74327 >seq1010 Length=204159 Score = 86.0 bits (94), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 8/218 (4%) Strand=Plus/Plus Query 1490 ATAGAGGGGGGAGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCAGTTTCGTAATGC 1549 ||||| ||||| ||||| |||| ||||| | |||| || ||||||||| | Sbjct 36376 ATAGAAGGGGGTGTTGACAAAGAAGAATTCTACATTTCCTAATGTCCAGTTTTTCCAACT 36435 Query 1550 TGTGTTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGACCCTTCG-----CCAGGATTG 1604 | ||| | |||| | ||| ||| |||||| || | |||| || |||||| Sbjct 36436 TAAATTTACATCTTGTTTGAGAAAAGATTTATA-CT--AATATTCGGTGTCCCTGGATTG 36492 Query 1605 CAAAGCACGATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCGTATTTGCAATTT 1664 || |||||||| ||||||| | ||||||||||||| | || ||||| ||| || | Sbjct 36493 CAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTACTTGACATGT 36552 Query 1665 GATTGCCAGTCCTTTTGAGCCCCAATCAATTCTTTCCA 1702 |||||||| | | | |||| ||||| |||||||| Sbjct 36553 GATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCA 36590 >seq77518 Length=14724 Score = 84.2 bits (92), Expect = 4e-13 Identities = 138/194 (71%), Gaps = 15/194 (8%) Strand=Plus/Minus Query 1490 ATAGAGGGGGGAGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCA-GTTTCGTAATG 1548 |||||| ||| || || |||| ||||| |||||| |||| ||||| | || ||| Sbjct 2509 ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATT 2450 Query 1549 CTGTGTTTTCCTCTTTGTCGAGGAAATCTTTATAA-------CTGGACCCTTCGCCAGGA 1601 || ||| ||| || | ||| |||||||| |||||||| |||||| Sbjct 2449 -TGAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCC----CCAGGA 2395 Query 1602 TTGCAAAGCACGATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCGTA-TTTGCA 1660 |||||||| ||||| |||| || || |||||||||||||| | || |||| ||||| Sbjct 2394 TTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGC- 2336 Query 1661 ATTTGATTGCCAGT 1674 |||||| || |||| Sbjct 2335 ATTTGACTGTCAGT 2322 >seq6801 Length=49729 Score = 80.6 bits (88), Expect = 4e-12 Identities = 138/194 (71%), Gaps = 16/194 (8%) Strand=Plus/Plus Query 1490 ATAGAGGGGGGAGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCA-GTTTCGTAATG 1548 |||||||||| ||||| ||| |||||||||||| ||| ||||| | || ||| Sbjct 46986 ATAGAGGGGGT-GTTGACGAAATGGAATTTTGCATTTTGTCAAGTCCAAGATTTCCAATT 47044 Query 1549 CTGTGTTTTCCTCTTTGTCGAGGAAATCTTTATAA-------CTGGACCCTTCGCCAGGA 1601 || ||| | | || | ||| ||||||| |||||||| | |||| Sbjct 47045 -TGAATTTGAATATAAATCCAAGAACGCTTTATAGGACAAATCTGGACCCCT----AGGA 47099 Query 1602 TTGCAAAGCACGATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCGTA-TTTGCA 1660 ||||||| ||||| |||| || || |||||||||||||| || |||||||| ||||| Sbjct 47100 GTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGC- 47158 Query 1661 ATTTGATTGCCAGT 1674 |||||| ||| ||| Sbjct 47159 ATTTGACTGCTAGT 47172 >seq490 Length=137872 Score = 77.0 bits (84), Expect = 5e-11 Identities = 182/269 (68%), Gaps = 11/269 (4%) Strand=Plus/Minus Query 1490 ATAGAGGGGGGAGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCAGTTTCGTA-ATG 1548 ||||| ||||| |||| ||| ||||| |||||| |||||||| | || || || Sbjct 70732 ATAGAAGGGGGTGTTGGCGAAATAGAATTCTGCATTTGCAATCGTCCACTCTCTTATATA 70673 Query 1549 CTGTGTTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGACCCTTCGC---CAGGATTGC 1605 | | || | | || || | ||| ||||||| | | ||| | || ||||| Sbjct 70672 C-GCATTAACATTCTTATCCAAGAATGATTTATAAGAGTAGCCTGTACTCTCATTATTGC 70614 Query 1606 AAAGCACGATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCGTATTTGCAATTTG 1665 | || || |||||||| || |||||||||||||| | ||||| | ||||| ||| | Sbjct 70613 ATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGAATCAG 70554 Query 1666 ATTGCCAGTCCTTTTGAGCCCCAATCAATTCTTTCCAGTGCTTTAGCTT-TAGATAGGTG 1724 ||||||| | | |||||||| | || |||| ||||| ||| ||| || || Sbjct 70553 CTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTT---CTTCCAGAGAGATG 70497 Query 1725 --GGCGCGATGTCGTCTATGATGTTGTAC 1751 || | || ||| ||||||| ||| ||| Sbjct 70496 CTGGAGGGACGTCATCTATGACGTTATAC 70468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8382419916780