Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_018090.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq33 129 1e-26 seq77518 123 4e-25 seq5745 123 4e-25 seq1993 113 8e-22 seq3439 102 1e-18 seq3283 96.9 6e-17 seq22495 93.3 7e-16 seq35612 87.8 3e-14 seq4104 82.4 1e-12 seq442 78.8 2e-11 seq5493 77.0 6e-11 >seq33 Length=454124 Score = 129 bits (142), Expect = 1e-26 Identities = 176/246 (72%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 1676 CCCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAATTTGAACTGGCTTTCCGTA 1735 ||| |||||||| || | ||| ||| || |||| ||||||||||||||| |||||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1736 CTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTT----- 1790 ||||| ||||| ||||||| | || | || | ||| | || | | || ||| Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1791 -AGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCACGCTTCGTTATTGTACACTTT 1849 | ||| || ||||||||||||||||| |||||||| ||||| ||| | | Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1850 CGGACTCAGATCTAAATGGCCACATAAGTAATTATGTGGACCCAACGACCTGGCCCACAT 1909 || | ||| ||| | | ||| || ||||||||||||||||||||| | ||||| | Sbjct 403123 CGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAAC 403064 Query 1910 TGTCTT 1915 ||| || Sbjct 403063 TGTTTT 403058 >seq77518 Length=14724 Score = 123 bits (136), Expect = 4e-25 Identities = 190/271 (70%), Gaps = 9/271 (3%) Strand=Plus/Minus Query 1657 CTTTATAACTTGAATTGGG---CCCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTT 1713 |||||||| | ||| || ||| |||||||| || | ||| ||| || ||||||| Sbjct 2423 CTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTT 2364 Query 1714 TAATTTGAACTGGCTTTCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGA 1773 |||||||||||| ||| ||||||||| ||||| || |||| | ||| || || | || Sbjct 2363 TAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGA 2304 Query 1774 ATTCTTTAAAGTGCT------TTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACC 1827 | | || | | |||| ||| ||| || || |||||||||||||| |||| Sbjct 2303 ACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATACC 2244 Query 1828 ACGCTTCGTTATTGTACACTTTCGGACTCAGATCTAAATGGCCACATAAGTAATTATGTG 1887 |||| ||||| ||| |||| | ||| ||| | | ||| || |||||||||| Sbjct 2243 ACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTATATAATTATGTG 2184 Query 1888 GACCCAACGACCTGGCCCACATTGTCTTCCC 1918 |||||||| | | ||||| | ||| || || Sbjct 2183 GACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq5745 Length=45059 Score = 123 bits (136), Expect = 4e-25 Identities = 196/281 (70%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 1647 TCTAGGTACTCTTTATAACTTGAATTGGG---CCCTGGATTGCAGAGGAAGATTGTTGGG 1703 |||| | || |||||||| | ||| || ||| |||||||| | | ||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1704 ATGCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGG 1763 || || ||||||||||||||||| || |||||||||| ||||| ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1764 GCCCCCATGAATTCTTTAAAGTGCT------TTAGATAGTGCGGGTCTACGTCATCAATG 1817 || || ||||| | || | | || | ||| ||| || | |||||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1818 ACGTTGTACCACGCTTCGTTATTGTACACTTTCGGACTCAGATCTAAATGGCCACATAAG 1877 ||||| ||||| || ||||| || ||||| | ||| ||| | | ||| || Sbjct 43688 ACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATA 43747 Query 1878 TAATTATGTGGACCCAACGACCTGGCCCACATTGTCTTCCC 1918 |||||||||||||||||||| | ||||| | ||| || || Sbjct 43748 TAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq1993 Length=81530 Score = 113 bits (124), Expect = 8e-22 Identities = 174/249 (70%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 1676 CCCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAATTTGAACTGGCTTTCCGTA 1735 ||| |||||||| || | ||| ||| || ||| |||||||||||||||| || ||||| Sbjct 74404 CCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTA 74345 Query 1736 CTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------T 1789 ||||| ||||| ||||| | | ||| || | | ||| | || | | || | | Sbjct 74344 CTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAAT 74285 Query 1790 TAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCACGCTTCGTTATTGTACACTTT 1849 || ||| || ||||||||||||||||| |||||||| | ||| || ||| Sbjct 74284 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTTTT 74225 Query 1850 CGGACTCAGATCTAAATGGCCACATAAGTAATTATGTGGACCCAACGACCTGGCCCACAT 1909 || | ||| ||| | | ||| || |||||||||||||||||||| | | ||| | Sbjct 74224 CGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCAAAC 74165 Query 1910 TGTCTTCCC 1918 ||| || || Sbjct 74164 TGTTTTACC 74156 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 171/246 (70%), Gaps = 10/246 (4%) Strand=Plus/Minus Query 1681 GATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTG 1740 ||||||| || | ||| |||| || |||||||||||||||||||| ||||||||||||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1741 TGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGAT 1794 ||| | ||||| | | || || || | ||| | || | | |||| ||| || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1795 AGTGCGGGTCTACGTCATCAATGACGTTGTACCACGCTTCGTTATTGTACACTTTCGGAC 1854 | | ||| || ||||| |||||||| ||||| || || || |||| ||| | | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1855 TCAGATC--TAAATGGCCACATAAGTAATTATGTGGACCCAACGACCTGGCCCACATTGT 1912 | | ||| ||||| || || ||| || ||||| || || || | ||||| ||| Sbjct 776 TAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGT 719 Query 1913 CTTCCC 1918 ||||| Sbjct 718 TTTCCC 713 >seq3283 Length=49157 Score = 96.9 bits (106), Expect = 6e-17 Identities = 174/253 (69%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 1674 GGCCCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAATTTGAACTGGCTTTCCG 1733 || || |||||||| || | ||| |||| || |||||||||||||||||||| || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1734 TACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1788 ||||||| || | ||||| | | || || || | ||| | || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1789 -TTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCACGCTTCGTTATTGTACACT 1847 ||| ||| | ||| ||||| || |||||||| ||||| || || || |||| | Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1848 TTCGGACTCAGATC--TAAATGGCCACATAAGTAATTATGTGGACCCAACGACCTGGCCC 1905 || | | | | ||| ||||| || || ||| || ||||| || || || | |||| Sbjct 2103 TTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1906 ACATTGTCTTCCC 1918 | ||| ||||| Sbjct 2045 ATGCTGTTTTCCC 2033 >seq22495 Length=567 Score = 93.3 bits (102), Expect = 7e-16 Identities = 168/246 (68%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 1658 TTTATAACTTGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAAT 1717 |||||| | ||| || || |||||||| || | ||| || | || |||| |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1718 TTGAACTGGCTTTCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTC 1777 ||||||||| ||||||||||||| || | ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1778 TTTAAAGTGCT------TTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCACGC 1831 || | | |||| ||| ||| | ||| | |||||| |||||||| ||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1832 TTCGTTATTGTACACTTTCGGACTCAGATCTAAATGGCCACATAAGTAATTATGTGGACC 1891 || || |||| ||| | | | | ||| ||| || || ||| || ||||| || Sbjct 206 ATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCC 147 Query 1892 CAACGA 1897 || || Sbjct 146 TAATGA 141 >seq35612 Length=1588 Score = 87.8 bits (96), Expect = 3e-14 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1658 TTTATAACTTGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAAT 1717 |||||| | ||| || || |||||||| || | ||| |||| |||||||||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1718 TTGAACTGGCTTTCCGTACTTTGTGTTTGATTGCCA 1753 ||||||||| ||||||||||||| ||| | ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 82.4 bits (90), Expect = 1e-12 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 1658 TTTATAACTTGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAAT 1717 |||||| | ||| ||| || |||||||| || | ||| |||| || ||||||||||| Sbjct 20846 TTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 20787 Query 1718 TTGAACTGGCTTTCCGTACTTTG 1740 ||||||||| ||||||||||||| Sbjct 20786 TTGAACTGGTTTTCCGTACTTTG 20764 >seq442 Length=237535 Score = 78.8 bits (86), Expect = 2e-11 Identities = 97/133 (73%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1658 TTTATAACTTGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAAT 1717 |||||| | |||| || || |||||||| || ||| |||| || |||||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1718 TTGAACTGGCTTTCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTC 1777 |||||||| ||||||||||||| || | ||| ||| | ||| || || | ||| | Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTG 22881 Query 1778 TTTAAAGTGCTTT 1790 || | | |||||| Sbjct 22882 TTAATAATGCTTT 22894 >seq5493 Length=32325 Score = 77.0 bits (84), Expect = 6e-11 Identities = 112/156 (72%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 1679 TGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTTTAATTTGAACTGGCTTTCCGTACTT 1738 ||||||||| | | || || ||| || | ||||||||||||||| || |||||||| Sbjct 31560 TGGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTT 31501 Query 1739 TGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAG-TGCTTT--AGATA 1795 ||||||||||||| ||| | || | | ||||| || | |||| ||||| Sbjct 31500 CACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAGCTTCTTTGCAGATA 31441 Query 1796 GTGCGGGTCTACGTCATCAATGACGTTGTACCACGC 1831 ||| |||||||||||||| ||||||||| || Sbjct 31440 TGTCGGTGATACGTCATCAATGATGTTGTACCATGC 31405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8654161218430