Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_018457.1 Length=2623 Score E Sequences producing significant alignments: (Bits) Value seq22495 104 4e-19 seq3439 100 5e-18 seq3283 100 5e-18 seq4104 96.9 6e-17 seq33 91.5 2e-15 seq54129 89.7 9e-15 seq5745 89.7 9e-15 seq35612 86.0 1e-13 seq6801 86.0 1e-13 seq77518 84.2 4e-13 seq442 78.8 2e-11 seq1993 77.0 5e-11 >seq22495 Length=567 Score = 104 bits (114), Expect = 4e-19 Identities = 195/282 (69%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 1451 ATAGAGGGGGGAGTTGAGGAAGACGAATTTCGCATTGTGAAGGGTCCAACCTTTCAATCC 1510 ||||||||||| || || |||| ||||| |||| || | |||||| |||| | Sbjct 473 ATAGAGGGGGGTGTCGACGAAGTGGAATTCTACATTTTGTAAAGTCCAAGTTTTCCAATA 414 Query 1511 TGCGTTTTCCTCTTTGTCGAGGAAAGATTTATAGCTGGAGCCCTCGCCAGGATTGCAAAG 1570 || || ||| || | ||| | ||||||| | | |||||||||||||| Sbjct 413 TGAATTGGACTCCAAATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAG 354 Query 1571 TATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTA-TTTGCAGTTTGATT 1629 || || | ||| ||| | ||||||||||||||| |||||||| |||||| || | | Sbjct 353 TACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCA-TTGGCCT 295 Query 1630 GCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAATGCT--TTAACTTTAGATATTGCGG 1687 |||||| || || |||| || | | ||||||| |||| ||| ||| | ||| Sbjct 294 GCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA--TTAAATAATTCGG 237 Query 1688 TGCGATGTCATCTATTACGTTGTACTGCACATCATTTGAATA 1729 | ||||||||| || ||||| ||| |||||||||| || Sbjct 236 AGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTA 195 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 194/282 (69%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 1451 ATAGAGGGGGGAGTTGAGGAAGACGAATTTCGCATTGTGAAGGGTCCAACCTTTCAATCC 1510 ||||||||||| || || |||| |||| ||||| || || |||||| |||| | Sbjct 1066 ATAGAGGGGGGTGTCGACGAAGTGAAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 1007 Query 1511 TGCGTTTTCCTCTTTGTCGAGGAAAGATTTATAGCTGGAGCCCTCGCCAGGATTGCAAAG 1570 || || ||| || | ||| | ||||||| | | ||| |||||||||| Sbjct 1006 TGAATTGGACTCCAAATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAG 947 Query 1571 TATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTA-TTTGCAGTTTGATT 1629 || || | |||| ||| ||||||||||||||||| |||||||| ||||| ||| | | Sbjct 946 TACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGC-GTTGGCAT 888 Query 1630 GCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAATGCT--TTAACTTTAGATATTGCGG 1687 |||| | | || || |||| || | | |||||| |||| ||| ||| | ||| Sbjct 887 GCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA--TTAAATAATTCGG 830 Query 1688 TGCGATGTCATCTATTACGTTGTACTGCACATCATTTGAATA 1729 | || ||||| || ||||| ||| |||||||||| || Sbjct 829 AGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTA 788 >seq3283 Length=49157 Score = 100 bits (110), Expect = 5e-18 Identities = 203/293 (69%), Gaps = 9/293 (3%) Strand=Plus/Minus Query 1441 TTGAACTTTGATAGAGGGGGGAGTTGAGGAAGACGAATTTCGCATTGTGAAGGGTCCAAC 1500 ||||| | | |||| |||||| || || |||| ||||| ||||| || || |||||| Sbjct 2395 TTGAATTCT-ATAGTGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAG 2337 Query 1501 CTTTCAATCCTGCGTTTTCCTCTTTGTCGAGGAAAGATTTATAGC-TGGAGCCCTCGCCA 1559 |||| | || || ||| || | ||| | ||||||| | || | ||| Sbjct 2336 TTTTCCAATATGAATTGGACTCCAAATCCAAGAACGTTTTATAGGATTGATCAGGT-CCA 2278 Query 1560 GGATTGCAAAGTATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTA-TTT 1618 ||||||||||||| || | |||| ||| ||||||||||||||||| || ||||| ||| Sbjct 2277 GGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTT 2218 Query 1619 GCAGTTTGATTGCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAATGCT--TTAACTTT 1676 ||| || | ||||| | | || || |||| || | | |||||| |||| || Sbjct 2217 GCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA--TT 2161 Query 1677 AGATATTGCGGTGCGATGTCATCTATTACGTTGTACTGCACATCATTTGAATA 1729 | ||| | ||| | || ||| || || ||||| ||| |||||||||| || Sbjct 2160 AAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTA 2108 >seq4104 Length=64936 Score = 96.9 bits (106), Expect = 6e-17 Identities = 128/175 (73%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 1451 ATAGAGGGGGGAGTTGAGGAAGACGAATTTCGCATTGTGAAGGGTCCAACCTTTCAATCC 1510 ||||||||||| ||||| |||| ||||| ||||| || || |||||| |||| | Sbjct 20933 ATAGAGGGGGGTGTTGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 20874 Query 1511 TGCGTTTTCCTCTTTGTCGAGGAAAGATTTATAGCTGGAGCCCTCG---CCAGGATTGCA 1567 || || ||| || | ||| | ||||||| || ||| ||||||||||| Sbjct 20873 TGAATTGGACTCCAAATCCAAGAACGTTTTATAG---GATAAATCGGGTCCAGGATTGCA 20817 Query 1568 AAGTATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTA-TTTGCA 1621 ||||| || | |||| ||| ||||||||||||||||| |||||||| |||||| Sbjct 20816 AAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCA 20762 >seq33 Length=454124 Score = 91.5 bits (100), Expect = 2e-15 Identities = 233/350 (67%), Gaps = 16/350 (5%) Strand=Plus/Minus Query 1452 TAGAGGGGGGAGTTGAGGAAGACGAATTTCGCATTGTGAAGGGTCCAACCTTTCAATCCT 1511 || || |||| || || |||| ||||| ||||| || | ||||| |||| | | Sbjct 403409 TATAGAGGGGTGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTT 403350 Query 1512 GCGTTTTCCTCTTTGTCGAGGAAAGATTTATAG-------CTGGAGCCCTCGCCAGGATT 1564 | ||| ||| | |||| ||| | |||||| ||||| ||| |||||| Sbjct 403349 GAATTTGAATCTATATCGAAGAACGCTTTATAAGACAACTCTGGACCCC-----AGGATT 403295 Query 1565 GCAAAGTATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTA-TTTGCAGT 1623 |||||| | || || |||| ||| | ||||||||||||||| |||||||| |||||| | Sbjct 403294 GCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCA-T 403236 Query 1624 TTGATTGCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAATGCTTTAACTTTAGATATT 1683 |||| ||||||| || | |||| || | | |||| ||| ||| ||| Sbjct 403235 TTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAG 403176 Query 1684 GCGGTGCGATGTCATCTATTACGTTGTACTGCACATCATTTGAATAGACCCGCGAATTGA 1743 || | || |||||| || ||||| ||| | | || || || || | |||||| | Sbjct 403175 CTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCA 403116 Query 1744 AATCGAGGTGACCGGACAAGTAGTTATG-GGACCCTAGCGCACGTGCCCA 1792 |||| | || | ||| ||||| |||||| | || ||||||||| Sbjct 403115 AATCCATAAAGCCCATTATGTAATTATGTGGACCC-AACGAACGTGCCCA 403067 >seq54129 Length=2260 Score = 89.7 bits (98), Expect = 9e-15 Identities = 128/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1557 CCAGGATTGCAAAGTATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTA- 1615 |||||||||||||||| || | |||| ||| ||||||||||||| ||| |||||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1616 TTTGCAGTTTGATTGCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAATGCT--TTAAC 1673 |||||| || | || |||| | || || |||| || | | |||||| |||| Sbjct 2197 TTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA- 2140 Query 1674 TTTAGATATTGCGGTGCGATGTCATCTATTACGTTGTACTGCACATCATTTGAATA 1729 ||| ||| | ||| | || || || || ||||| ||| ||||||||||| || Sbjct 2139 -TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 >seq5745 Length=45059 Score = 89.7 bits (98), Expect = 9e-15 Identities = 183/270 (68%), Gaps = 13/270 (5%) Strand=Plus/Plus Query 1451 ATAGAGGGGGGAGTTGAGGAAGACGAATTTCGCATTGTGAAGGGTCCAACCTTTCAATCC 1510 |||||| |||| || || |||| |||| ||||| || | ||| | |||| | Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1511 TGCGTTTTCCTCTTTGTCGAGGAAAGATTTATAG-------CTGGAGCCCTCGCCAGGAT 1563 || ||| ||| | || | ||| | |||||| ||||| ||| |||||| Sbjct 43492 TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCC----CAGGAT 43547 Query 1564 TGCAAAGTATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTA-TTTGCAG 1622 |||||| | || || |||| ||| ||||||||||||||||| || ||||| |||||| Sbjct 43548 TGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCA- 43606 Query 1623 TTTGATTGCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAATGCTTTAACTTTAGATAT 1682 ||||| ||||| | ||| || ||||| || | | |||| ||| ||| ||| Sbjct 43607 TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAA 43666 Query 1683 TGCGGTGCGATGTCATCTATTACGTTGTAC 1712 || | ||||||||| || ||||| ||| Sbjct 43667 GCTGGAGGGATGTCATCAATGACGTTATAC 43696 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 1451 ATAGAGGGGGGAGTTGAGGAAGACGAATTTCGCATTGTGAAGGGTCCAACCTTTCAATCC 1510 ||||||||||| || || |||| ||||| ||||| || || |||||| |||| | Sbjct 1404 ATAGAGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 1463 Query 1511 TGCGTTTTCCTCTTTGTCGAGGAAAGATTTATAGCTGGAGCCCTCGCCAGGATTGCAAAG 1570 || || ||| || | ||| | ||||||| | | |||||||||||||| Sbjct 1464 TGAATTGGACTCCAAATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAG 1523 Query 1571 TATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTA-TTTGCAGTTTGATT 1629 || || | |||| || ||||||||||||||||| |||||||| ||||| ||| | | Sbjct 1524 TACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGC-GTTGGCCT 1582 Query 1630 GCCA 1633 |||| Sbjct 1583 GCCA 1586 >seq6801 Length=49729 Score = 86.0 bits (94), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 14/193 (7%) Strand=Plus/Plus Query 1451 ATAGAGGGGGGAGTTGAGGAAGACGAATTTCGCATTGTGAAGGGTCCAACCTTTCAATCC 1510 |||||||||| ||||| ||| |||||| ||||| || |||||| |||| | Sbjct 46986 ATAGAGGGGGT-GTTGACGAAATGGAATTTTGCATTTTGTCAAGTCCAAGATTTCCAATT 47044 Query 1511 TGCGTTTTCCTCTTTGTCGAGGAAAGATTTATAG-------CTGGAGCCCTCGCCAGGAT 1563 || ||| | | || | ||| | ||||||| ||||| |||| |||| Sbjct 47045 TGAATTTGAATATAAATCCAAGAACGCTTTATAGGACAAATCTGGACCCCT----AGGAG 47100 Query 1564 TGCAAAGTATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTA-TTTGCAG 1622 ||||||||| || || |||| ||| ||||||||||||||||| || ||||| |||||| Sbjct 47101 TGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCA- 47159 Query 1623 TTTGATTGCCAGT 1635 ||||| ||| ||| Sbjct 47160 TTTGACTGCTAGT 47172 >seq77518 Length=14724 Score = 84.2 bits (92), Expect = 4e-13 Identities = 184/271 (68%), Gaps = 15/271 (6%) Strand=Plus/Minus Query 1451 ATAGAGGGGGGAGTTGAGGAAGACGAATTTCGCATTGTGAAGGGTCCAACCTTT-CAATC 1509 |||||| ||| || || |||| ||||| ||||| || | ||||| ||| |||| Sbjct 2509 ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATT 2450 Query 1510 CTGCGTTTTCCTCTTTGTCGAGGAAAGATTTATAG-------CTGGAGCCCTCGCCAGGA 1562 || ||| ||| || | ||| | |||||| ||||| ||| ||||| Sbjct 2449 -TGAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCCC----CAGGA 2395 Query 1563 TTGCAAAGTATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTA-TTTGCA 1621 |||||||||| || || |||| ||| |||||||||||||||| ||| |||| |||||| Sbjct 2394 TTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCA 2335 Query 1622 GTTTGATTGCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAATGCTTTAACTTTAGATA 1681 ||||| || |||| ||| || |||| || | | |||||||| ||| ||| Sbjct 2334 -TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATA 2276 Query 1682 TTGCGGTGCGATGTCATCTATTACGTTGTAC 1712 || | || ||||| || ||||| ||| Sbjct 2275 AGCTGGAGGGACATCATCAATGACGTTATAC 2245 >seq442 Length=237535 Score = 78.8 bits (86), Expect = 2e-11 Identities = 126/175 (72%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 1557 CCAGGATTGCAAAGTATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTA- 1615 ||||||||||||||| || | |||| | | |||||||||||||||| |||||||| Sbjct 22781 CCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAACTGATTTTCCGTAC 22840 Query 1616 TTTGCAGTTTGATTGCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAATGCTTTAACTT 1675 |||||| || | ||| ||| | ||| || |||| || | | |||||||| | Sbjct 22841 TTTGCA-TTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTTAATAATGCTTTTTAAT 22899 Query 1676 TAGATATTGCGGTGCGATGTCATCTATTACGTTGTA-CTGCACATCATTTGAATA 1729 || ||| | || | || ||| || || ||||| || ||| |||||||||| || Sbjct 22900 TAAATAATTCGAAGGGACGTC-TCGATAACGTTATACCTG--CATCATTTGAGTA 22951 >seq1993 Length=81530 Score = 77.0 bits (84), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 1554 TCGCCAGGATTGCAAAGTATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCG 1613 || |||||||||||||| | || || |||| ||| |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1614 TA-TTTGCAGTTTGATTGCCA 1633 || |||||| ||||| ||||| Sbjct 74346 TACTTTGCA-TTTGACTGCCA 74327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8276920352610