Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_019569.1 Length=2647 Score E Sequences producing significant alignments: (Bits) Value seq3283 87.8 3e-14 seq3439 84.2 4e-13 seq5745 80.6 4e-12 seq54129 78.8 2e-11 >seq3283 Length=49157 Score = 87.8 bits (96), Expect = 3e-14 Identities = 183/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 1575 TCCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCAATCACTCTTGGCTTTCCGTA 1634 |||||||||||| || ||||| || | ||| |||| ||| ||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1635 -TTTACAGTTTGACTGCCACTTCTTTTGAGAGCCAATCAGTTCTTTCCAGTGTTTCAACT 1693 ||| || || | |||||| || || | ||| | | | || | || ||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1694 TTAGGTAATGCGGTGGTACGTCATCAATGACGTTATACTCCACTTCGTCTGAGTAGACCT 1753 ||| |||| ||| || ||||| || |||||||||||| | || | |||||| | Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 2103 Query 1754 TTGAGTTGAAATCCAGGTGTCCACTTAGGTAATTGTGTGGGCCTAAGGCACGAGCCCACA 1813 | || || ||||||| ||| ||| ||| |||||||||||||| | ||||||||| Sbjct 2102 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 2043 Query 1814 TCGTCTTCCCTGTCCTTGAATCACCTTCAA 1843 || |||||| | ||||| ||||||| Sbjct 2042 CTGTTTTCCCTATTCTTGATGGGCCTTCAA 2013 >seq3439 Length=62978 Score = 84.2 bits (92), Expect = 4e-13 Identities = 180/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 1575 TCCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCAATCACTCTTGGCTTTCCGTA 1634 |||| ||||||| || ||||| || | ||| |||| ||| ||| |||||||| Sbjct 961 TCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTA 902 Query 1635 TTTACAGTTTGACTGCCACTTCTTTTGAGAGCCAATCAGTTCTTTCCAGTGTTTCAACTT 1694 || ||| | ||||| || || | ||| | | | || | || ||| | Sbjct 901 CTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 842 Query 1695 TAGGTAATGCGGTGGTACGTCATCAATGACGTTATACTCCACTTCGTCTGAGTAGACCTT 1754 || |||| ||| || || ||||| |||||||||||| | || | |||||| || Sbjct 841 TAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 782 Query 1755 TGAGTTGAAATCCAGGTGTCCACTTAGGTAATTGTGTGGGCCTAAGGCACGAGCCCACAT 1814 || || ||||||| ||| ||| ||| |||||||||||||| | ||||||||| Sbjct 781 GGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 722 Query 1815 CGTCTTCCCTGTCCTTGAATCACCTTCAA 1843 || |||||| | ||||| ||||||| Sbjct 721 TGTTTTCCCTATTCTTGATGGGCCTTCAA 693 >seq5745 Length=45059 Score = 80.6 bits (88), Expect = 4e-12 Identities = 229/350 (65%), Gaps = 13/350 (4%) Strand=Plus/Plus Query 1470 ATAGAGGGGGGCGTCGAGGAAGATGAATTTAGCATTTTTCAATGTCCAGGAACGCAGTGA 1529 |||||| |||| ||||| |||| |||| |||||||| || ||| | || | Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1530 TGCGTTTTCCTCTTTGTCTAGGAAGTCTTTATAG-------CTGGCCCCCTCTCCAGGAT 1582 || ||| ||| | |||| ||| ||||||| |||| |||| |||||| Sbjct 43492 TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCC----CAGGAT 43547 Query 1583 TGCATAGCACGATTGAAGGGACCCCACCTTCAATCACTCTTGGCTTTCCGTA-TTTACAG 1641 |||| | |||||| | || | |||||||| ||| ||| || ||||| ||| || Sbjct 43548 TGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCA- 43606 Query 1642 TTTGACTGCCACTTCTTTTGAGAGCCAATCAGTTCTTTCCAGTGTTTCAACTTTAGGTAA 1701 ||||||||||| || ||| | || || | | || | ||||| ||| ||| Sbjct 43607 TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAA 43666 Query 1702 TGCGGTGGTACGTCATCAATGACGTTATACTCCACTTCGTCTGAGTAGACCTTTGAGTTG 1761 || || | ||||||||||||||||||| | |||| || || || || || Sbjct 43667 GCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTC 43726 Query 1762 AAATCCAGGTGTCCACTTAGGTAATTGTGTGGGCCTAAGGCACGAGCCCA 1811 ||||||| || ||| ||||| ||||| || || | ||| ||||| Sbjct 43727 AAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 181/270 (67%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 1575 TCCAGGATTGCATAGCACGATTGAAGGGACCCCACCTTCAATCACTCTTGGCTTTCCGTA 1634 |||||||||||| || ||||| || | ||| |||| ||| |||| |||||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1635 -TTTACAGTTTGACTGCCACTTCTTTTGAGAGCCAATCAGTTCTTTCCAGTGTTTCAACT 1693 ||| || || | ||| || || | || | ||| | | | || | || ||| Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1694 TTAGGTAATGCGGTGGTACGTCATCAATGACGTTATACTCCACTTCGTCTGAGTAGACCT 1753 ||| |||| ||| || || || || |||||||||||| || || | |||||| | Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTT 2080 Query 1754 TTGAGTTGAAATCCAGGTGTCCACTTAGGTAATTGTGTGGGCCTAAGGCACGAGCCCACA 1813 | || || |||| || ||| ||| ||| |||||| ||| ||| | ||||||||| Sbjct 2079 TGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCATG 2020 Query 1814 TCGTCTTCCCTGTCCTTGAATCACCTTCAA 1843 || || ||| | ||||| ||||||| Sbjct 2019 CTGTTTTTCCTATTCTTGATGGGCCTTCAA 1990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8353647308370