Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020236.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq3283 100 5e-18 seq3439 96.9 6e-17 seq22495 86.0 1e-13 seq33 78.8 2e-11 seq77518 77.0 6e-11 seq5745 77.0 6e-11 >seq3283 Length=49157 Score = 100 bits (110), Expect = 5e-18 Identities = 181/261 (69%), Gaps = 14/261 (5%) Strand=Plus/Minus Query 1674 GGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1733 || ||||||||||| || | ||| | || ||||||||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1734 TATTTAGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1788 || || | || | ||||| | | || || || | ||||| || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1789 -TGAGGAAGTGCGGGTCGACGTCATCAATGACGTTGAACCAAGCATCATTACTGTATACC 1847 | | | | ||| |||||| || |||||||| |||| |||||||| || ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACG 2106 Query 1848 TTT--GGACTCAGATC--TAAATGACCACACAGATAGTTGTGTGGGCCTAGTGACCTAGC 1903 ||| | | | | ||| ||||| || | |||||||||||||||| ||| | ||| Sbjct 2105 TTTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGC 2048 Query 1904 CCACATCGTCTTCCCGGTTCT 1924 ||| || ||||| |||| Sbjct 2047 CCATGCTGTTTTCCCTATTCT 2027 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 180/261 (69%), Gaps = 14/261 (5%) Strand=Plus/Minus Query 1674 GGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1733 || ||| ||||||| || | ||| | || ||||||||||||||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1734 TATTTAGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1788 || || | ||| | ||||| | | || || || | ||||| || | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1789 -TGAGGAAGTGCGGGTCGACGTCATCAATGACGTTGAACCAAGCATCATTACTGTATACC 1847 | | | | ||| ||| ||||| |||||||| |||| |||||||| || ||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT--TGAGTACG 786 Query 1848 TTT--GGACTCAGATC--TAAATGACCACACAGATAGTTGTGTGGGCCTAGTGACCTAGC 1903 ||| | | | | ||| ||||| || | |||||||||||||||| ||| | ||| Sbjct 785 TTTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGC 728 Query 1904 CCACATCGTCTTCCCGGTTCT 1924 ||| || ||||| |||| Sbjct 727 CCATGCTGTTTTCCCTATTCT 707 >seq22495 Length=567 Score = 86.0 bits (94), Expect = 1e-13 Identities = 159/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 1674 GGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1733 || ||||||||||| || | ||| | | ||||||| ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1734 TATTTAGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1788 || || | || | ||||||| | || || || | ||||| || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1789 -TGAGGAAGTGCGGGTCGACGTCATCAATGACGTTGAACCAAGCATCATTACTGTATACC 1847 | | | | ||| || |||||| |||||||| |||| |||||||| || ||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT--TGAGTACG 193 Query 1848 TTT--GGACTCAGATCTAAATGACCACACAGATAGTTGTGTGGGCCTAGTGA 1897 ||| | | | | ||| ||| || | |||||||||||||||| ||| Sbjct 192 TTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq33 Length=454124 Score = 78.8 bits (86), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 1647 TCGAGGAATTCTTTATAA--CTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTCGGTA 1704 |||| ||| |||||||| | || | | ||||||||||| || | ||| || | Sbjct 403334 TCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAA 403275 Query 1705 TCCCGCCTTTAATTTGAACTGGCTTCCCGTATTTAGTGTTTGATTGCCAGTCCCTTTGGG 1764 |||||| ||||||||||||||| || ||||| || | ||||| ||||||| | || Sbjct 403274 TCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTA 403215 Query 1765 CCCCCATGAACTCTT--TAAAG-TGCTTGAGGAAGT--GC-GGGTCGACGTCATCAATGA 1818 | || | ||||| || ||| | | || | || | || || |||||||||||||| Sbjct 403214 CGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGA 403155 Query 1819 CGTTGAACCAAGCATCATT 1837 |||| |||| || || || Sbjct 403154 CGTTATACCACGCGTCGTT 403136 >seq77518 Length=14724 Score = 77.0 bits (84), Expect = 6e-11 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1677 CCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1736 ||||||||||| || | ||| || |||||||||||||||||||||| || |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1737 TTAGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGC---TTGAGG 1793 || | ||||| || |||| | ||| || || | ||||| || | | ||| || | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1794 AAGT--GC-GGGTCGACGTCATCAATGACGTTGAACCAAGCATCATT 1837 || | || || ||| |||||||||||||| |||| || || || Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq5745 Length=45059 Score = 77.0 bits (84), Expect = 6e-11 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1677 CCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1736 ||||||||||| | | ||| || ||||| ||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1737 TTAGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGCTTGAGG 1793 || | ||||| ||||| | | ||| || || ||||||| || ||| | | || | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1794 AAGT--GC-GGGTCGACGTCATCAATGACGTTGAACCAAGCATCATT 1837 || | || || || ||||||||||||||| |||| || || || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8676539913860