Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020253.1 Length=2676 Score E Sequences producing significant alignments: (Bits) Value seq33 143 4e-31 seq5745 127 3e-26 seq77518 111 3e-21 seq3283 96.9 6e-17 seq1993 93.3 7e-16 seq4295 91.5 2e-15 seq5493 89.7 9e-15 seq3439 89.7 9e-15 seq22495 80.6 5e-12 >seq33 Length=454124 Score = 143 bits (158), Expect = 4e-31 Identities = 241/345 (70%), Gaps = 3/345 (1%) Strand=Plus/Minus Query 1506 TACAGGGGGGAGTCGAGGAAGATGAATTTTGCATTGTGGAGTGTCCACGACTTTAATGCT 1565 || || |||| ||||| |||| ||||| |||||| || | |||||||| || | | Sbjct 403409 TATAGAGGGGTGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTT 403350 Query 1566 GCATTCTCCTCTTTGTCTAGGTACTCTTTATAACTGA-CTCCCTCCCCCTGGATTGCAGA 1624 | ||| ||| | || | | || |||||||| | ||| |||| |||||||| | Sbjct 403349 GAATTTGAATCTATATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAA 403290 Query 1625 GCACGATTGATGGTATCCCACCTTTAATTTTGAACTGGCTTTTCCGTACTTGCAATTTGA 1684 ||||||| |||| ||||| | |||||||| ||||||| |||||||||||| |||||| Sbjct 403289 GCACGATACATGGAATCCCGCTTTTAATTT-GAACTGG-TTTTCCGTACTTTGCATTTGA 403232 Query 1685 CTGCCAGTCTTTTTGAGCACCAATCAACTCCTTCCAGTGCTTTAACTTTAGATATTGCGG 1744 |||||||| || | || | |||| | | || ||| ||| ||| || Sbjct 403231 CTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGG 403172 Query 1745 GTTGACGTCATCAATGACGTTGTATTCCACTTCGTTCGAGTAAACCCTAGAATTGAAGTC 1804 |||||||||||||||||| || | | ||||||||||| || ||||| || || Sbjct 403171 AGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATC 403112 Query 1805 GAGATGACCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCA 1849 | | || | | |||||||||||| || |||| ||| ||||| Sbjct 403111 CATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq5745 Length=45059 Score = 127 bits (140), Expect = 3e-26 Identities = 244/350 (70%), Gaps = 10/350 (3%) Strand=Plus/Plus Query 1505 ATACAGGGGGGAGTCGAGGAAGATGAATTTTGCATTGTGGAGTGTCCACGACTT-TAATG 1563 ||| || |||| ||||| |||| |||| ||||| || | ||| |||| || |||| Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1564 CTGCATTCTCCTCTTTGTCTAGGTACTCTTTATAAC-TGACTCCCT-CCCCCTGGATTGC 1621 || ||| ||| | |||| | || |||||||| | | || ||||| ||||||| Sbjct 43492 -TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGC 43550 Query 1622 AGAGCACGATTGATGGTATCCCACCTTTAATTTTGAACTGGCTTTTCCGTACTTGCAATT 1681 | | |||||| |||| ||||||||||||| |||||||||| ||| |||||||| ||| Sbjct 43551 AAATCACGATACATGGAATCCCACCTTTAA-TTTGAACTGG-TTTGCCGTACTTTGCATT 43608 Query 1682 TGACTGCCAGTCTTTTTGAGCACCAATCAACTCCTTCCAGTGCTTTAACTTTAGATATTG 1741 ||||||||| | ||| || || || |||| | | || ||| ||| ||| Sbjct 43609 TGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGC 43668 Query 1742 CGGGTTGACGTCATCAATGACGTTGTATTCCA--CTTCGTTCGAGTAAACCCTAGAATTG 1799 || || |||||||||||||| ||| ||| | |||||||| || | ||||| Sbjct 43669 TGGAGGGATGTCATCAATGACGT--TATACCATGCGTCGTTCGATTATGTTTTCGAATTC 43726 Query 1800 AAGTCGAGATGACCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCA 1849 || || | | || | | ||||||||||| || |||| ||| ||||| Sbjct 43727 AAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq77518 Length=14724 Score = 111 bits (122), Expect = 3e-21 Identities = 236/347 (68%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 1505 ATACAGGGGGGAGTCGAGGAAGATGAATTTTGCATTGTGGAGTGTCCACGACTTTAATGC 1564 ||| || ||| ||||| |||| ||||| |||||| || | |||||||| ||| | Sbjct 2509 ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATT 2450 Query 1565 TGCATTCTCCTCTTTGTCTAGGTACTCTTTATAAC-TGACTCCCT-CCCCCTGGATTGCA 1622 || ||| ||| || | | | |||||||| | | || ||||| |||||||| Sbjct 2449 TGAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCA 2390 Query 1623 GAGCACGATTGATGGTATCCCACCTTTAATTTTGAACTGGCTTTTCCGTACTTGCAATTT 1682 || ||||| |||| ||||| |||||||||| |||||| ||||| |||||| |||| Sbjct 2389 AAGTACGATACATGGAATCCCGCCTTTAATTT-GAACTGATTTTTC-GTACTTTGCATTT 2332 Query 1683 GACTGCCAGTCTTTTTGAGCACCAATCAACTCCTTCCAGTGCTTTAACTTTAGATATTGC 1742 ||||| |||| ||| || || | |||| | | |||||| ||| ||| Sbjct 2331 GACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCT 2272 Query 1743 GGGTTGACGTCATCAATGACGTTGTATTCCACTTCGTTCGAGTAAACCCTAGAATTGAAG 1802 || ||| |||||||||||||| || | | ||||||||||| | |||| || Sbjct 2271 GGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAA 2212 Query 1803 TCGAGATGACCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCA 1849 || | | || | | ||||||||||| || ||| ||| ||||| Sbjct 2211 TCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCA 2165 >seq3283 Length=49157 Score = 96.9 bits (106), Expect = 6e-17 Identities = 244/363 (67%), Gaps = 15/363 (4%) Strand=Plus/Minus Query 1510 GGGGGGAGTCGAGGAAGATGAATTTTGCATTGTGGAGTGTCCACGACTTTAATGCTGCAT 1569 |||||| ||||| |||| ||||| |||||| || || ||||| | || | || || Sbjct 2381 GGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAAT 2322 Query 1570 TCTCCTCTTTGTCTAGGTACTCTTTATA--ACTGACTCCCTCCCCCTGGATTGCAGAGCA 1627 | ||| || | | || |||||| | ||| ||| |||||||| || | Sbjct 2321 TGGACTCCAAATCCAAGAACGTTTTATAGGATTGATCAGGTCCA---GGATTGCAAAGTA 2265 Query 1628 CGATTGATGGTATCCCACCTTTAATTTTGAACTGGCTTTTCCGTACTTGCAATTTGACTG 1687 |||| ||| ||||| |||||||||| ||||||| ||| |||||||| ||| | ||| Sbjct 2264 CGATACTTGGAATCCCGCCTTTAATTT-GAACTGG-TTTCCCGTACTTTGCATTGGCCTG 2207 Query 1688 CCAGTCTTTTTGAGCACCAATCAACTCCTTCCAGTGCTT--TAACTTTAGATATTGCGGG 1745 ||| | | || || || | |||| | | ||||| ||| ||| ||| | ||| Sbjct 2206 CCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA--TTAAATAATTCGGA 2149 Query 1746 TTGACGTCATCAATGACGTTGTATTCCA--CTTCGTTCGAGTAAACCCTAGAATTGAAGT 1803 |||||| || |||||||| || ||| | || || ||||| | ||||| || | Sbjct 2148 GGGACGTCGTCGATGACGTTATA--CCATGCATCATTTGAGTACGTTTTGGAATTAAAAT 2091 Query 1804 CGAGATGACCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTG 1863 | | | || | | ||| || ||||||||||| | ||||||||| || |||||| Sbjct 2090 CCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTA 2031 Query 1864 TTC 1866 ||| Sbjct 2030 TTC 2028 >seq1993 Length=81530 Score = 93.3 bits (102), Expect = 7e-16 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 1610 CCCCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTTAATTTTGAACTGGCTTTTCC 1669 |||| |||||||| |||||||| |||| ||||| ||||||||| ||||||| ||| || Sbjct 74405 CCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTT-GAACTGG-TTTGCC 74348 Query 1670 GTACTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAACTCCTTCCAGTGCTTTAA 1729 |||||| |||||||||||| | ||| || | | |||| | | || ||| Sbjct 74347 GTACTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1730 CTTTAGATATTGCGGGTTGACGTCATCAATGACGTTGTATTCCACTTCGTTCGAGTAAAC 1789 ||| ||| || |||||||||||||||||| || | | | |||||| || Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGT 74228 Query 1790 CCTAGAATTGAAGTCGAGATGACCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCA 1849 | ||||| || || | | || | | ||||||||||| || |||| ||| | ||| Sbjct 74227 TTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCA 74168 >seq4295 Length=67413 Score = 91.5 bits (100), Expect = 2e-15 Identities = 241/358 (67%), Gaps = 20/358 (6%) Strand=Plus/Minus Query 1511 GGGGGAGTCGAGGAAGATGAATTTTGCATTGTGGAGTGTCCACGACTTTAATGCTGCATT 1570 ||||| |||| ||||| ||||| |||||| | |||||| ||| || | | ||| Sbjct 46949 GGGGGTGTCGGCGAAGAAGAATTCTGCATTTCCTAATGTCCATTTCTTCAAAGTTAAATT 46890 Query 1571 CTCCTCTTTGTCTAGGTACTCTTTATAACTGACTCCCTCC---CCCTGGATTGCAGAGCA 1627 |||| || || | ||||||| | || | || || ||||||| |||||| Sbjct 46889 TATATCTTGTTCGAGAAAAGCTTTATA-CGAACACTCTGGTGTCCTTGGATTGTAGAGCA 46831 Query 1628 CGATTGATGGTATCCCACCTTTAATTTTGAACTGGCTTTTCCGTACTTGCAATTTGACTG 1687 ||||| |||| || || ||||||| ||||| |||| ||| ||||||||| |||||| | Sbjct 46830 CGATTCATGGGATTCCCCCTTTAA-TTTGATCTGG-TTTACCGTACTTGGCATTTGAGTT 46773 Query 1688 CCAGTCTTTTTGAGCACCAATCAACTCCTTCCAGTGCTTTAACTTTAGATATTGCGGGTT 1747 ||| | | || || |||| | ||| || || | ||| || | ||| || | Sbjct 46772 CCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAATA----GGATA 46717 Query 1748 G----ACGTCATCAATGACGTTGTATTCCA--CTTCGTTCGAGTAAACCCTAGAATTGAA 1801 | |||||||| || |||||||| ||| | | ||||| | | ||||| || Sbjct 46716 GAGATACGTCATCTATAACGTTGTA--CCATGCATTATTCGAAAATGATTTCGAATTAAA 46659 Query 1802 GTCGA-GATGACCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCACATCGTCTT 1858 || | || | ||| | | ||| |||||||||| ||| | || ||||| || ||||| Sbjct 46658 ATCCATGAAGCCCA-TTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGTCTT 46602 >seq5493 Length=32325 Score = 89.7 bits (98), Expect = 9e-15 Identities = 117/157 (75%), Gaps = 9/157 (6%) Strand=Plus/Minus Query 1614 TGGATTGCAGAGCACGATTGATGGTATCCCACCTTTAATTTTGAACTGGCTTTTCCGTAC 1673 ||||||||| | ||| || ||| || |||| |||||||| ||||||| ||| |||||| Sbjct 31560 TGGATTGCACATCACAATACATGTGATTCCACTTTTAATTT-GAACTGG-TTTACCGTAC 31503 Query 1674 TTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAACTCCTTCCAGTGCTTTAACTTT 1733 || |||||| ||||||| | ||||| | || | ||| |||||| ||| |||| Sbjct 31502 TTCACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAG--CTT---CTTT 31448 Query 1734 --AGATATTGCGGGTTGACGTCATCAATGACGTTGTA 1768 |||||| ||| ||||||||||||| |||||| Sbjct 31447 GCAGATATGTCGGTGATACGTCATCAATGATGTTGTA 31411 >seq3439 Length=62978 Score = 89.7 bits (98), Expect = 9e-15 Identities = 244/366 (67%), Gaps = 11/366 (3%) Strand=Plus/Minus Query 1505 ATACAGGGGGGAGTCGAGGAAGATGAATTTTGCATTGTGGAGTGTCCACGACTTTAATGC 1564 ||| ||||||| ||||| |||| |||| |||||| || || ||||| | || | Sbjct 1066 ATAGAGGGGGGTGTCGACGAAGTGAAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 1007 Query 1565 TGCATTCTCCTCTTTGTCTAGGTACTCTTTATAACTGACTCCCTCCCCCTGGATTGCAGA 1624 || ||| ||| |||| | || |||||| | | | || | |||||| | Sbjct 1006 TGAATTGGACTCCAAATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAG-ATTGCAAA 948 Query 1625 GCACGATTGATGGTATCCCACCTTTAATTTTGAACTGGCTTTTCCGTACTTGCAATTTGA 1684 | ||||| ||| ||||| |||||||||| ||||||| |||||||||||| || | Sbjct 947 GTACGATACTTGGAATCCCGCCTTTAATTT-GAACTGG-TTTTCCGTACTTTGCGTTGGC 890 Query 1685 CTGCCAGTCTTTTTGAGCACCAATCAACTCCTTCCAGTGCTT--TAACTTTAGATATTGC 1742 ||||| | | || || || | |||| | | ||||| ||| ||| ||| | | Sbjct 889 ATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA--TTAAATAATTC 832 Query 1743 GGGTTGACGTCATCAATGACGTTGTATTCCA--CTTCGTTCGAGTAAACCCTAGAATTGA 1800 || ||| ||||| |||||||| || ||| | || || ||||| | ||||| | Sbjct 831 GGAGGGACATCATCGATGACGTTATA--CCATGCATCATTTGAGTACGTTTTGGAATTAA 774 Query 1801 AGTCGAGATGACCACTCAAGTAATTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCC 1860 | || | | || | | ||| || ||||||||||| | ||||||||| || |||| Sbjct 773 AATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCC 714 Query 1861 CTGTTC 1866 || ||| Sbjct 713 CTATTC 708 >seq22495 Length=567 Score = 80.6 bits (88), Expect = 5e-12 Identities = 164/237 (69%), Gaps = 10/237 (4%) Strand=Plus/Minus Query 1612 CCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTTAATTTTGAACTGGCTTTTCCGT 1671 || |||||||| || ||||| | | ||||| | |||||||| ||||||| |||||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTT-GAACTGG-TTTTCCGT 310 Query 1672 ACTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAACTCCTTCCAGTGCT--TTAA 1729 |||| ||| | |||||||| || || || | |||| | || |||| |||| Sbjct 309 ACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1730 CTTTAGATATTGCGGGTTGACGTCATCAATGACGTTGTATTCCA--CTTCGTTCGAGTAA 1787 ||| ||| | ||| || |||||| ||||||| ||| ||| | || || ||||| Sbjct 249 --TTAAATAATTCGGAGGGATGTCATCGATGACGT--TATACCATGCATCATTTGAGTAC 194 Query 1788 ACCCTAGAATTGAAGTCGAGATGACCACTCAAGTAATTATGTGGGCCTAACGCACGA 1844 | ||||| || || | | || | | ||| || ||||||||||| | |||| Sbjct 193 GTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8446359046580