Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020254.1 Length=2664 Score E Sequences producing significant alignments: (Bits) Value seq3283 118 2e-23 seq3439 113 8e-22 seq5745 105 1e-19 seq54129 93.3 7e-16 seq22495 87.8 3e-14 seq1993 86.0 1e-13 seq77518 80.6 4e-12 seq953 78.8 2e-11 seq1010 77.0 5e-11 >seq3283 Length=49157 Score = 118 bits (130), Expect = 2e-23 Identities = 269/403 (67%), Gaps = 4/403 (1%) Strand=Plus/Minus Query 1492 ATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAGGCTCTCAATGA 1551 |||| |||||| ||||| |||| ||||| ||||| || || ||||| | | || | | Sbjct 2386 ATAGTGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 2327 Query 1552 TGCATTTTCCTCCTTGTCGAGATACTCTTTATA--ACTGGCCCCCTCTCCAGGATTGCAG 1609 || ||| |||| || | || |||||| | || | || |||||||||| Sbjct 2326 TGAATTGGACTCCAAATCCAAGAACGTTTTATAGGATTGATCAGGTC--CAGGATTGCAA 2269 Query 1610 AGCACGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTGCCGTACTTGCAATTTGAC 1669 || ||||| ||| || || |||||||| | ||| || |||||||| ||| | | Sbjct 2268 AGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCC 2209 Query 1670 TGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGATAATGGGGT 1729 ||||| | | || || || | || | | | ||||| ||| ||||| || Sbjct 2208 TGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGA 2149 Query 1730 GTGACATCATCGATGACGTTATACTCAGCATCGTCTGAGTAGACCCGGGAATTGAAATCC 1789 | ||| || ||||||||||||||| ||||| | |||||| |||||| |||||| Sbjct 2148 GGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCC 2089 Query 1790 AGATGGCCACTTAAGTAATTATGTGGGCCTAATGCTCGAGCCCACATCGTCTTGCCCGTT 1849 | | || ||| ||| || ||||||||||||| |||||||| || || || || Sbjct 2088 ATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATT 2029 Query 1850 CGAGAGTCACCCTCAACAATTAAACTTATGGGCCTCTCTGGTC 1892 | || || |||| ||| | || ||||||| || |||| Sbjct 2028 CTTGATGGGCCTTCAATAATAATGCTCATGGGCCGTTCAGGTC 1986 >seq3439 Length=62978 Score = 113 bits (124), Expect = 8e-22 Identities = 268/404 (66%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 1492 ATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAGGCTCTCAATGA 1551 ||||||||||| ||||| |||| |||| ||||| || || ||||| | | || | | Sbjct 1066 ATAGAGGGGGGTGTCGACGAAGTGAAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 1007 Query 1552 TGCATTTTCCTCCTTGTCGAGATACTCTTTATAACTGGCCCCCTC---TCCAGGATTGCA 1608 || ||| |||| || | || |||||| || || |||| ||||||| Sbjct 1006 TGAATTGGACTCCAAATCTAAGAACGTTTTATA---GGATAATTCAGGTCCAAGATTGCA 950 Query 1609 GAGCACGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTGCCGTACTTGCAATTTGA 1668 || ||||| ||| || || |||||||| | ||| || |||||||| || | Sbjct 949 AAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGC 890 Query 1669 CTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGATAATGGGG 1728 ||||| | | || || || | || | | | ||||| ||| ||||| || Sbjct 889 ATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGG 830 Query 1729 TGTGACATCATCGATGACGTTATACTCAGCATCGTCTGAGTAGACCCGGGAATTGAAATC 1788 | |||||||||||||||||||||| ||||| | |||||| |||||| ||||| Sbjct 829 AGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATC 770 Query 1789 CAGATGGCCACTTAAGTAATTATGTGGGCCTAATGCTCGAGCCCACATCGTCTTGCCCGT 1848 || | || ||| ||| || ||||||||||||| |||||||| || || || | Sbjct 769 CATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCTAT 710 Query 1849 TCGAGAGTCACCCTCAACAATTAAACTTATGGGCCTCTCTGGTC 1892 || || || |||| ||| | || ||||||| || |||| Sbjct 709 TCTTGATGGGCCTTCAATAATAATGCTCATGGGCCGTTCAGGTC 666 >seq5745 Length=45059 Score = 105 bits (116), Expect = 1e-19 Identities = 245/370 (66%), Gaps = 11/370 (3%) Strand=Plus/Plus Query 1492 ATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAGGCTCTCAATGA 1551 |||||| |||| ||||| |||| |||| |||||| || | ||| | | | || | Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1552 TGCATTTTCCTCCTTGTCGAGATACTCTTTATAA-------CTGGCCCCCTCTCCAGGAT 1604 || |||| || | || | || |||||||| |||| |||| |||||| Sbjct 43492 TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCC----CAGGAT 43547 Query 1605 TGCAGAGCACGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTGCCGTACTTGCAAT 1664 |||| | |||||| |||| || || |||||||| | ||| ||||||||||| || Sbjct 43548 TGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCAT 43607 Query 1665 TTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGATAAT 1724 |||||||||| | ||| || || || || | | | || ||| ||| |||| Sbjct 43608 TTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAG 43667 Query 1725 GGGGTGTGACATCATCGATGACGTTATACTCAGCATCGTCTGAGTAGACCCGGGAATTGA 1784 || | || ||||| |||||||||||| || |||| || || ||||| | Sbjct 43668 CTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCA 43727 Query 1785 AATCCAGATGGCCACTTAAGTAATTATGTGGGCCTAATGCTCGAGCCCACATCGTCTTGC 1844 |||||| | ||| ||| ||||||||||| || || | || ||||| | || || | Sbjct 43728 AATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTAC 43787 Query 1845 CCGTTCGAGA 1854 | ||| ||| Sbjct 43788 CGATTCTAGA 43797 >seq54129 Length=2260 Score = 93.3 bits (102), Expect = 7e-16 Identities = 198/296 (67%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 1597 TCCAGGATTGCAGAGCACGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTGCCGTA 1656 |||||||||||| || ||||| ||| || || |||||||| | |||| || ||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1657 CTTGCAATTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTT 1716 ||| ||| | ||| || | | || || || | || | | | ||||| | Sbjct 2198 CTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAAT 2139 Query 1717 TAGATAATGGGGTGTGACATCATCGATGACGTTATACTCAGCATCGTCTGAGTAGACCCG 1776 || ||||| || | |||||| ||||||||||||||| |||| | |||||| Sbjct 2138 TAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTTT 2079 Query 1777 GGAATTGAAATCCAGATGGCCACTTAAGTAATTATGTGGGCCTAATGCTCGAGCCCACAT 1836 |||||| |||| || | || ||| ||| || ||| ||| ||||| |||||||| Sbjct 2078 GGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCATGC 2019 Query 1837 CGTCTTGCCCGTTCGAGAGTCACCCTCAACAATTAAACTTATGGGCCTCTCTGGTC 1892 || || || ||| || || |||| ||| | || ||||||| || |||| Sbjct 2018 TGTTTTTCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCCGTTCAGGTC 1963 >seq22495 Length=567 Score = 87.8 bits (96), Expect = 3e-14 Identities = 221/335 (66%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 1492 ATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAGGCTCTCAATGA 1551 ||||||||||| ||||| |||| ||||| |||| || | ||||| | | || | | Sbjct 473 ATAGAGGGGGGTGTCGACGAAGTGGAATTCTACATTTTGTAAAGTCCAAGTTTTCCAATA 414 Query 1552 TGCATTTTCCTCCTTGTCGAGATACTCTTTATAACTGGCCCCCTC---TCCAGGATTGCA 1608 || ||| |||| || | | |||||| || || |||||||||||| Sbjct 413 TGAATTGGACTCCAAATCTAAGAATGTTTTATA---GGATAAATCAGGTCCAGGATTGCA 357 Query 1609 GAGCACGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTGCCGTACTTGCAATTTGA 1668 || ||||| | | || || | |||||| | ||| || |||||||| ||| | Sbjct 356 AAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGC 297 Query 1669 CTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGATAATGGGG 1728 |||||| | || || || | || | | || ||||| ||| ||||| || Sbjct 296 CTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGG 237 Query 1729 TGTGACATCATCGATGACGTTATACTCAGCATCGTCTGAGTAGACCCGGGAATTGAAATC 1788 | || |||||||||||||||||| ||||| | |||||| |||||| ||||| Sbjct 236 AGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATC 177 Query 1789 CAGATGGCCACTTAAGTAATTATGTGGGCCTAATG 1823 || | || ||| ||| || ||||||||||||| Sbjct 176 CAAAAATCCTATTATGTAGTTGTGTGGGCCTAATG 142 >seq1993 Length=81530 Score = 86.0 bits (94), Expect = 1e-13 Identities = 193/289 (67%), Gaps = 1/289 (0%) Strand=Plus/Minus Query 1595 TCTCCAGGATTGCAGAGCACGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTGCCG 1654 || ||||||||||| |||||||| |||| || || ||||||| | ||| |||||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1655 TACTTGCAATTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGC 1714 ||||| |||||||||||| | ||| || | | || | | | || ||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTA 74287 Query 1715 TTTAGATAATGGGGTGTGACATCATCGATGACGTTATACTCAGCATCGTCTGAGTAGACC 1774 ||| |||| || | ||| ||||| |||||||||||| || | || || || Sbjct 74286 ATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTT 74227 Query 1775 CGGGAATTGAAATCCAGATGGCCACTTAAGTAATTATGTGGGCCTAATGCTCGAGCCCAC 1834 ||||| ||||||| | ||| ||| ||||||||||| || || | || | ||| Sbjct 74226 TTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCAA 74167 Query 1835 ATCGTCTTGCCCGTTCGAGAGTCACCCTCAACAATTAAACTTATGGGCC 1883 | || || || ||| ||| || |||| || ||| || |||||| Sbjct 74166 ACTGTTTTACCGATTCTAGAAGGTCCTTCAATAA-TAATTTTTTGGGCC 74119 >seq77518 Length=14724 Score = 80.6 bits (88), Expect = 4e-12 Identities = 222/338 (66%), Gaps = 13/338 (4%) Strand=Plus/Minus Query 1492 ATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAGGCTCT-CAATG 1550 |||||| ||| ||||| |||| ||||| ||||| || | ||||| | | | |||| Sbjct 2509 ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATT 2450 Query 1551 ATGCATTTTCCTCCTTGTCGAGATACTCTTTATAA-------CTGGCCCCCTCTCCAGGA 1603 || |||| || || | | |||||||| |||| |||| ||||| Sbjct 2449 -TGAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCCC----CAGGA 2395 Query 1604 TTGCAGAGCACGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTGCCGTACTTGCAA 1663 ||||| || ||||| |||| || || |||||||| | || || ||||||| | Sbjct 2394 TTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCA 2335 Query 1664 TTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGATAA 1723 |||||||| || | ||| || || | || | | | |||||| ||| |||| Sbjct 2334 TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAA 2275 Query 1724 TGGGGTGTGACATCATCGATGACGTTATACTCAGCATCGTCTGAGTAGACCCGGGAATTG 1783 || | ||||||||| |||||||||||| || |||| ||||| |||| Sbjct 2274 GCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTC 2215 Query 1784 AAATCCAGATGGCCACTTAAGTAATTATGTGGGCCTAA 1821 ||||||| | ||| ||| ||||||||||| || || Sbjct 2214 AAATCCATAAAGCCCATTATATAATTATGTGGACCCAA 2177 >seq953 Length=224861 Score = 78.8 bits (86), Expect = 2e-11 Identities = 163/239 (68%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 1597 TCCAGGATTGCAGAGCACGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTGCCGTA 1656 |||||||||||| | ||||| ||| || || |||||||| | ||| || ||||| Sbjct 1842 TCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCGTA 1901 Query 1657 CTT-GCAATTTGAC-TGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGC 1714 ||| ||| ||||| ||||| | | || | || | || | | | | |||| Sbjct 1902 CTTTGCA--TTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1715 TTTAGATAATGGGGTGTGACATCATCGATGACGTTATACTCAGCATCGTCTGAGTAGACC 1774 ||| ||||| || | ||| || ||||| ||||||||| ||||| | |||||| Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTT 2019 Query 1775 CGGGAATTGAAATCCAGATGGCCACTTAAGTAATTATGTGGGCCTAATGCTCGAGCCCA 1833 ||||| ||||||| | | ||| ||| || ||||||||||||| |||||||| Sbjct 2020 TTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2078 >seq1010 Length=204159 Score = 77.0 bits (84), Expect = 5e-11 Identities = 174/256 (68%), Gaps = 7/256 (3%) Strand=Plus/Minus Query 1602 GATTGCAGAGCACGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTGCCGTACTTGC 1661 |||||||||||||||| || |||| | |||||||| ||| || |||||||| Sbjct 40914 GATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTACTTAG 40855 Query 1662 AATTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGAT 1721 |||||| ||||| | | || | | ||| | || ||||| || ||| ||| | Sbjct 40854 CATTTGATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTT--TTTTTGCA 40797 Query 1722 AATGGGGT-GTGACA--TCATCGATGACGTTATACTCAGCATCGTCTGAGTAGACCCGGG 1778 ||| || | | |||| ||||| || || |||||| |||| | || | | Sbjct 40796 AATAGGATAGAGACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGATTTTG 40737 Query 1779 AATTGAAATCCA-GATGGCCACTTAAGTAATTATGTGGGCCTAATGCTCGAGCCCACATC 1837 |||| ||||| | || | ||| ||| ||| |||||||||||||| | ||| |||| || Sbjct 40736 AATTAAAATCTATGAAGCCCA-TTATGTAGTTATGTGGGCCTAAAGATCGTTCCCATATT 40678 Query 1838 GTCTTGCCCGTTCGAG 1853 ||||| || ||| || Sbjct 40677 GTCTTTCCAATTCTAG 40662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8407995568700