Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020257.1 Length=2685 Score E Sequences producing significant alignments: (Bits) Value seq33 120 5e-24 seq3283 109 9e-21 seq22495 102 1e-18 seq3439 100 5e-18 seq5745 96.9 6e-17 seq77518 91.5 2e-15 seq490 89.7 9e-15 seq4295 87.8 3e-14 seq953 82.4 1e-12 seq20728 80.6 5e-12 seq1010 80.6 5e-12 seq815 80.6 5e-12 seq54129 77.0 6e-11 >seq33 Length=454124 Score = 120 bits (132), Expect = 5e-24 Identities = 239/349 (68%), Gaps = 14/349 (4%) Strand=Plus/Minus Query 1518 ATAGAGGGGAGATGT-GAGGAAGATGAATCTCGCATTGCGGAGTGTCCAGGTTCTTAATG 1576 ||||||||| ||| || |||| |||| ||||| | | ||||| | | | | Sbjct 403408 ATAGAGGGG---TGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAAT 403352 Query 1577 ATGAGTTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGCCCCCTCT-----CCAGAATT 1631 ||| ||| ||| | |||| ||| |||||||| | | |||| |||| ||| Sbjct 403351 TTGAATTTGAATCTATATCGAAGAACGCTTTATAA---GACAACTCTGGACCCCAGGATT 403295 Query 1632 GCAAAGCACGATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTACTT-GCAAT 1690 |||||||||||| ||| || || | ||||||||||||||| || |||||||| ||| | Sbjct 403294 GCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATT 403235 Query 1691 TGCTTTGCCAGTCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTTTAGATAGT 1750 || | |||||| | ||| | || | || | || | || ||| ||| ||| Sbjct 403234 TGACT-GCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAG 403176 Query 1751 GCGGGGCGACGTCATCAATGACGTTATACTCCGCCTCGTTCGAGTAAACCCTAGAATTGA 1810 || | |||||||||||||||||||||| ||| ||||||||||| || ||||| | Sbjct 403175 CTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCA 403116 Query 1811 AATCTAGGTGTCCGCTCAAGTAATTGTGTGAACCTAAAGCACGGGCCCA 1859 |||| | || | | |||||| |||| ||| || | ||| ||||| Sbjct 403115 AATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq3283 Length=49157 Score = 109 bits (120), Expect = 9e-21 Identities = 174/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 1623 TCCAGAATTGCAAAGCACGATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTA 1682 ||||| ||||||||| ||||| ||| || || ||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1683 CTTGCAATTGCTTTGCCAGTCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTT 1742 ||| |||| ||||| | | ||| || || | || | || | ||||| | Sbjct 2221 CTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 2162 Query 1743 TAGATAGTGCGGGGCGACGTCATCAATGACGTTATACTCCGCCTCGTTCGAGTAAACCCT 1802 || ||| | ||| | |||||| || |||||||||||| || || || ||||| | Sbjct 2161 TAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 2102 Query 1803 AGAATTGAAATCTAGGTGTCCGCTCAAGTAATTGTGTGAACCTAAAGCACGGGCCCACAT 1862 ||||| ||||| | ||| | | ||| ||||||| ||||| | ||| ||||| Sbjct 2101 GGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 2042 Query 1863 CGTCTTCCCT 1872 || |||||| Sbjct 2041 TGTTTTCCCT 2032 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 1623 TCCAGAATTGCAAAGCACGATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTA 1682 ||||| ||||||||| ||||| | | || || | ||||||||||||||| || ||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1683 CTTGCAATTGCTTTGCCAGTCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTT 1742 ||| |||| ||||||| | ||| || || | || | || || ||||| | Sbjct 308 CTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1743 TAGATAGTGCGGGGCGACGTCATCAATGACGTTATACTCCGCCTCGTTCGAGTAAACCCT 1802 || ||| | ||| | || |||||| |||||||||||| || || || ||||| | Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 189 Query 1803 AGAATTGAAATCTAGGTGTCCGCTCAAGTAATTGTGTGAACCTAAAGCACG 1853 ||||| ||||| | ||| | | ||| ||||||| ||||| | ||| Sbjct 188 GGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACG 138 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 172/250 (69%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 1623 TCCAGAATTGCAAAGCACGATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTA 1682 |||| ||||||||| ||||| ||| || || ||||||||||||||||| || ||||| Sbjct 961 TCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTA 902 Query 1683 CTTGCAATTGCTTTGCCAGTCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTT 1742 ||| ||| ||||| | | ||| || || | || | || | ||||| | Sbjct 901 CTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAAT 842 Query 1743 TAGATAGTGCGGGGCGACGTCATCAATGACGTTATACTCCGCCTCGTTCGAGTAAACCCT 1802 || ||| | ||| | ||| ||||| |||||||||||| || || || ||||| | Sbjct 841 TAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 782 Query 1803 AGAATTGAAATCTAGGTGTCCGCTCAAGTAATTGTGTGAACCTAAAGCACGGGCCCACAT 1862 ||||| ||||| | ||| | | ||| ||||||| ||||| | ||| ||||| Sbjct 781 GGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 722 Query 1863 CGTCTTCCCT 1872 || |||||| Sbjct 721 TGTTTTCCCT 712 >seq5745 Length=45059 Score = 96.9 bits (106), Expect = 6e-17 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 1624 CCAGAATTGCAAAGCACGATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTAC 1683 |||| |||||||| |||||| ||| || || ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1684 -TTGCAATTGCTTTGCCAGTCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTT 1742 ||||| ||| ||||| | | || || || || || | || | || ||| | Sbjct 43601 TTTGCATTTG-ACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1743 TAGATAGTGCGGGGCGACGTCATCAATGACGTTATACTCCGCCTCGTTCGAGTAAACCCT 1802 || ||| || | || ||||||||||||||||||| || |||||||| || | Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTT 43719 Query 1803 AGAATTGAAATCTAGGTGTCCGCTCAAGTAATTGTGTGAACCTAAAGCACGGGCCCA 1859 ||||| ||||| | || | | ||||| |||| ||| || | ||| ||||| Sbjct 43720 CGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq77518 Length=14724 Score = 91.5 bits (100), Expect = 2e-15 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 1624 CCAGAATTGCAAAGCACGATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTAC 1683 |||| ||||||||| ||||| ||| || || |||||||||||||||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1684 -TTGCAATTGCTTTGCCAGTCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTT 1742 ||||| ||| || |||| | || || || | || | || | |||||| | Sbjct 2340 TTTGCATTTG-ACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1743 TAGATAGTGCGGGGCGACGTCATCAATGACGTTATACTCCGCCTCGTTCGAGTA 1796 || ||| || | ||| |||||||||||||||||| ||| ||||||||||| Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTA 2228 >seq490 Length=137872 Score = 89.7 bits (98), Expect = 9e-15 Identities = 170/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 1629 ATTGCAAAGCACGATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTACTTGCA 1688 |||||| || || |||| |||||| || ||||||||||| | ||||||| | || || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1689 ATTGCTTTGCCAGTCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTT-TAGAT 1747 || ||||||| || ||||||||| | || |||| ||||| ||| ||| Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTT---CTTCCAGAG 70502 Query 1748 AG-TGC-GGGGCGACGTCATCAATGACGTTATACTCCGCCTCGTTCGAGTAAACCCTAGA 1805 || ||| || | ||||||||| |||||||||||| | ||| || || | | | Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCT 70442 Query 1806 ATTGAAATCTAGGTGTCCGCTCAAGTAATTGTGTGAACCTAAAGCACGGGCCCACATCGT 1865 ||||||||| | || | |||||||| |||| ||| ||| | ||||| || Sbjct 70441 ATTGAAATCCATAACGCCCATAAAGTAATTATGTGGACCCAAACTTCTAGCCCATTCAGT 70382 Query 1866 CTTCCC 1871 |||||| Sbjct 70381 CTTCCC 70376 >seq4295 Length=67413 Score = 87.8 bits (96), Expect = 3e-14 Identities = 228/339 (67%), Gaps = 9/339 (3%) Strand=Plus/Minus Query 1536 GAAGATGAATCTCGCATTGCGGAGTGTCCAGGTTCTT-AATGATGAGTTTTCCTCTTTGT 1594 ||||| |||| ||||| | | |||||| ||||| || | | | ||| |||| | Sbjct 46937 GAAGAAGAATTCTGCATTTCCTAATGTCCAT-TTCTTCAAAGTTAAATTTATATCTTGTT 46879 Query 1595 CGAGGAAATCTTTATAACTGGCCCCCTC---TCCA-GAATTGCAAAGCACGATTGCTGGT 1650 |||| ||| ||||||| | | | || ||| | |||| | ||||||||| ||| Sbjct 46878 CGAGAAAAGCTTTATA-CGAACACTCTGGTGTCCTTGGATTGTAGAGCACGATTCATGGG 46820 Query 1651 ATACCTCCTTTAATTTGAACTGGCTTACCGTACTT-GCAATTGCTTTGCCAGTCCCTCTG 1709 || || |||||||||||| |||| ||||||||||| ||| ||| || ||| | ||| Sbjct 46819 ATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTGGCATTTGAGTT-CCAATTGTACTG 46761 Query 1710 GGCCCCAATTAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGGGCGACGTCATCAAT 1769 |||| |||| | ||||| || | ||| || | |||| | | |||||||| || Sbjct 46760 GGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAATAGGATAGAGATACGTCATCTAT 46701 Query 1770 GACGTTATACTCCGCCTCGTTCGAGTAAACCCTAGAATTGAAATCTAGGTGTCCGCTCAA 1829 ||||| ||| || | ||||| | | ||||| ||||| | | || | | Sbjct 46700 AACGTTGTACCATGCATTATTCGAAAATGATTTCGAATTAAAATCCATGAAGCCCATTAT 46641 Query 1830 GTAATTGTGTGAACCTAAAGCACGGGCCCACATCGTCTT 1868 ||| || |||| | ||||| || ||||| || ||||| Sbjct 46640 GTAGTTATGTGGGCATAAAGACCGTGCCCATATTGTCTT 46602 >seq953 Length=224861 Score = 82.4 bits (90), Expect = 1e-12 Identities = 168/250 (67%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 1623 TCCAGAATTGCAAAGCACGATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTA 1682 ||||| |||||||| ||||| ||| || || ||||||||||||| || || ||||| Sbjct 1842 TCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCGTA 1901 Query 1683 CTTGCAATTGCTTTGCCAGTCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTT 1742 ||| |||| ||||| | | ||| | || | || | || | | |||| | Sbjct 1902 CTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTAAT 1961 Query 1743 TAGATAGTGCGGGGCGACGTCATCAATGACGTTATACTCCGCCTCGTTCGAGTAAACCCT 1802 || ||| | ||| | |||||| || || ||||||||| || || || ||||| | Sbjct 1962 TAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATTTGAGTACGTTTT 2021 Query 1803 AGAATTGAAATCTAGGTGTCCGCTCAAGTAATTGTGTGAACCTAAAGCACGGGCCCACAT 1862 ||||| ||||| | || | | ||| ||||||| ||||| | ||| ||||| Sbjct 2022 CGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 2081 Query 1863 CGTCTTCCCT 1872 || |||||| Sbjct 2082 TGTTTTCCCT 2091 >seq20728 Length=3653 Score = 80.6 bits (88), Expect = 5e-12 Identities = 154/226 (68%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 1647 TGGTATACCTCCTTTAATTTGAACTGGCTTACCGTACTTGCAATTGCTTTGCCAGTCCCT 1706 ||| || || ||||||||||||| ||| || |||||||| |||| |||| || | Sbjct 1441 TGGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCG 1499 Query 1707 CTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGGGCGACGTCATC 1766 ||| || || | || | || | |||||| ||| ||| | ||| | ||||||||| Sbjct 1500 CTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1767 AATGACGTTATACTCCGCCTCGTTCGAGTAAACCCTAGAATTGAAATCTAGGTGTCCGCT 1826 ||||||||||| || || || ||||| | ||||| ||||||| || | Sbjct 1560 GATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATAAATCTCAT 1619 Query 1827 CAAGTAATTGTGTGAACCTAAAGCACGGGCCCACATCGTCTTCCCT 1872 | ||| ||||||| |||| | ||| ||||| || |||||| Sbjct 1620 TATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCT 1665 >seq1010 Length=204159 Score = 80.6 bits (88), Expect = 5e-12 Identities = 167/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 1629 ATTGCAAAGCACGATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTACTT-GC 1687 |||||| |||||||| | | || | ||||||||| |||||| ||||||||||| || Sbjct 40913 ATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTACTTAGC 40854 Query 1688 AATTGCTTTGCCAGTCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTT-TAGA 1746 | ||| |||||| | |||| ||| ||| | |||||||| || ||| || | | Sbjct 40853 ATTTG-ATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTTTTTTTGCAAA 40795 Query 1747 TAGTGCGGGGCGACGTCATCAATGACGTTATACTCCGCCTCGTTCGAGTAAACCCTAGAA 1806 ||| | | |||||||| || || |||||| || | ||||| | | ||| Sbjct 40794 TAGGATAGAGACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGATTTTGAA 40735 Query 1807 TTGAAATCTAGGTGTCCGCTCAAGTAATTGTGTGAACCTAAAGCACGGGCCCACATCGTC 1866 || ||||||| | || | | ||| || |||| ||||||| || |||| || ||| Sbjct 40734 TTAAAATCTATGAAGCCCATTATGTAGTTATGTGGGCCTAAAGATCGTTCCCATATTGTC 40675 Query 1867 TTCCC 1871 || || Sbjct 40674 TTTCC 40670 >seq815 Length=151552 Score = 80.6 bits (88), Expect = 5e-12 Identities = 170/251 (68%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 1623 TCCAGAATTGCAAAGCACGATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTA 1682 ||||| ||||||||| || || ||| || || |||||||||||| | || || |||| Sbjct 85422 TCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCGTA 85363 Query 1683 C-TTGCAATTGCTTTGCCAGTCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCT 1741 | ||||| | || || ||||| | ||| || || | || | || | | ||| Sbjct 85362 CTTTGCATTGGCCTT-CCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAAA 85304 Query 1742 TTAGATAGTGCGGGGCGACGTCATCAATGACGTTATACTCCGCCTCGTTCGAGTAAACCC 1801 ||| ||| | | | | |||||| || |||||||||||| || || || ||||| Sbjct 85303 TTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 85244 Query 1802 TAGAATTGAAATCTAGGTGTCCGCTCAAGTAATTGTGTGAACCTAAAGCACGGGCCCACA 1861 | ||||| ||||| | ||| | | ||| ||||||| ||||| ||| ||||| Sbjct 85243 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCCCATG 85184 Query 1862 TCGTCTTCCCT 1872 | | |||||| Sbjct 85183 TTATTTTCCCT 85173 >seq54129 Length=2260 Score = 77.0 bits (84), Expect = 6e-11 Identities = 111/157 (71%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 1623 TCCAGAATTGCAAAGCACGATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTA 1682 ||||| ||||||||| ||||| ||| || || ||||||||||||| ||| || ||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1683 CTTGCAATTGCTTTGCCAGTCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTT 1742 ||| |||| || |||| ||| || || | || | || | ||||| | Sbjct 2198 CTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAAT 2139 Query 1743 TAGATAGTGCGGGGCGACGTCATCAATGACGTTATAC 1779 || ||| | ||| | ||| || || |||||||||||| Sbjct 2138 TAAATAATTCGGAGGGACATCGTCGATGACGTTATAC 2102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8475131654990