Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_020473.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq77518 111 3e-21 seq22495 109 1e-20 seq3283 109 1e-20 seq33 105 1e-19 seq3439 104 4e-19 seq5745 102 1e-18 seq1993 93.3 7e-16 seq442 91.5 3e-15 seq35612 89.7 9e-15 seq54129 86.0 1e-13 seq4104 86.0 1e-13 seq6801 84.2 4e-13 seq815 84.2 4e-13 seq30129 82.4 1e-12 seq80468 78.8 2e-11 >seq77518 Length=14724 Score = 111 bits (122), Expect = 3e-21 Identities = 192/281 (68%), Gaps = 15/281 (5%) Strand=Plus/Minus Query 1641 TCCAAGTATTCTTTATAGCTTGAATTTGGACCT---GGATTGCAGAGGAAGATTGTTGGG 1697 |||||| || ||||||| | ||| |||||| |||||||| || | ||| ||| Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1698 ATACCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGG 1757 || ||||||||||||||||||| ||| ||||||||| |||||| || |||| | ||| Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1758 GCCCCCATGAATTCGTGCT------------TTAGATATTGCGGATCGACGTCATCGATG 1805 || || | ||| | || | ||| ||| ||| ||| ||||| ||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATG 2254 Query 1806 ACGTTGTACCACGCTTCATTACTGTACACTTTTGGACTTAAGTCCAAATGGCCACAAAGA 1865 ||||| |||||||| || || ||| ||| | | || |||| | ||| | | Sbjct 2253 ACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTATA 2194 Query 1866 TAATTATGTGGACCCAAAGACCTGGCCCACATTGTCTTCCC 1906 ||||||||||||||||| | | ||||| | ||| || || Sbjct 2193 TAATTATGTGGACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq22495 Length=567 Score = 109 bits (120), Expect = 1e-20 Identities = 161/226 (71%), Gaps = 14/226 (6%) Strand=Plus/Minus Query 1641 TCCAAGTATTCTTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATA 1700 || ||| || ||||||| | ||| || || |||||||| || | ||| || | || Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1701 CCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCC 1760 |||| ||||||||||||||| ||||||||||||| ||| | ||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1761 CCCATGAATT------CGTGCT------TTAGATATTGCGGATCGACGTCATCGATGACG 1808 || | ||| | |||| ||| ||| | |||| || ||||||||||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1809 TTGTACCACGCTTCATTACTGTACACTTTTGGACTT-AAGTCCAAA 1853 || ||||| || ||||| |||| ||||||| || || |||||| Sbjct 217 TTATACCATGCATCATTTGAGTAC-GTTTTGGAATTAAAATCCAAA 173 >seq3283 Length=49157 Score = 109 bits (120), Expect = 1e-20 Identities = 194/280 (69%), Gaps = 16/280 (6%) Strand=Plus/Minus Query 1641 TCCAAGTATTCTTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATA 1700 |||||| | ||||||| | || || || |||||||| || | ||| |||| || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2251 Query 1701 CCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCC 1760 |||||||||||||||||||| || |||||||||| ||| | ||||| | || || || Sbjct 2250 CCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2191 Query 1761 CCCATGAATTCGTGCT------------TTAGATATTGCGGATCGACGTCATCGATGACG 1808 || | ||| | || | ||| ||| | |||| |||||| ||||||||| Sbjct 2190 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACG 2131 Query 1809 TTGTACCACGCTTCATTACTGTACACTTTTGGACTT-AAGTCCA-AATGGCCACAAAGAT 1866 || ||||| || ||||| |||| ||||||| || || |||| || ||| | | | Sbjct 2130 TTATACCATGCATCATTTGAGTAC-GTTTTGGAATTAAAATCCATAAATCCCATTATG-T 2073 Query 1867 AATTATGTGGACCCAAAGACCTGGCCCACATTGTCTTCCC 1906 | || ||||| || || || | ||||| ||| ||||| Sbjct 2072 AGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2033 >seq33 Length=454124 Score = 105 bits (116), Expect = 1e-19 Identities = 171/246 (70%), Gaps = 14/246 (6%) Strand=Plus/Minus Query 1671 CCTGGATTGCAGAGGAAGATTGTTGGGATACCGCCTTTAATTTGAACTGGCTTTCCGTAC 1730 || |||||||| || | ||| ||| || |||| ||||||||||||||| ||||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1731 TTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCGTGCT------------TT 1778 |||| |||||| ||||||| | || | || | ||| | || | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1779 AGATATTGCGGATCGACGTCATCGATGACGTTGTACCACGCTTCATTACTGTACACTTTT 1838 | ||| ||| ||||||||| |||||||| |||||||| || || ||| | | Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1839 GGACTTAAGTCCA-AATGGCCACAAAGATAATTATGTGGACCCAAAGACCTGGCCCACAT 1897 | | | || |||| || | ||| | | ||||||||||||||||| || | ||||| | Sbjct 403122 GAATTCAAATCCATAAAGCCCATTATG-TAATTATGTGGACCCAACGAACGTGCCCAAAC 403064 Query 1898 TGTCTT 1903 ||| || Sbjct 403063 TGTTTT 403058 >seq3439 Length=62978 Score = 104 bits (114), Expect = 4e-19 Identities = 186/269 (69%), Gaps = 16/269 (6%) Strand=Plus/Minus Query 1652 TTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATACCGCCTTTAAT 1711 ||||||| | | | || || ||||||| || | ||| |||| || ||||||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1712 TTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTC 1771 ||||||||| ||||||||||||| || | ||||| | || || || || | ||| | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1772 GTGCT------------TTAGATATTGCGGATCGACGTCATCGATGACGTTGTACCACGC 1819 || | ||| ||| | |||| ||| |||||||||||||| ||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1820 TTCATTACTGTACACTTTTGGACTT-AAGTCCA-AATGGCCACAAAGATAATTATGTGGA 1877 ||||| |||| ||||||| || || |||| || ||| | | || || ||||| Sbjct 799 ATCATTTGAGTAC-GTTTTGGAATTAAAATCCATAAATCCCATTATG-TAGTTGTGTGGG 742 Query 1878 CCCAAAGACCTGGCCCACATTGTCTTCCC 1906 || || || | ||||| ||| ||||| Sbjct 741 CCTAATGAACGAGCCCATGCTGTTTTCCC 713 >seq5745 Length=45059 Score = 102 bits (112), Expect = 1e-18 Identities = 184/271 (68%), Gaps = 15/271 (6%) Strand=Plus/Plus Query 1651 CTTTATAGCTTGAATTTGGACCT---GGATTGCAGAGGAAGATTGTTGGGATACCGCCTT 1707 ||||||| | ||| |||||| |||||||| | | ||| ||| || || |||| Sbjct 43518 CTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGAATCCCACCTT 43577 Query 1708 TAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGA 1767 ||||||||||||| || |||||||||| |||||| ||||| | | ||| || || |||| Sbjct 43578 TAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGA 43637 Query 1768 ATTCGTGCT------------TTAGATATTGCGGATCGACGTCATCGATGACGTTGTACC 1815 | | || | ||| ||| ||| || |||||| |||||||| |||| Sbjct 43638 ACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATGACGTTATACC 43697 Query 1816 ACGCTTCATTACTGTACACTTTTGGACTTAAGTCCAAATGGCCACAAAGATAATTATGTG 1875 | || || || || ||| | | | || |||| | ||| | ||||||||||| Sbjct 43698 ATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTG 43757 Query 1876 GACCCAAAGACCTGGCCCACATTGTCTTCCC 1906 ||||||| || | ||||| | ||| || || Sbjct 43758 GACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq1993 Length=81530 Score = 93.3 bits (102), Expect = 7e-16 Identities = 168/248 (68%), Gaps = 12/248 (5%) Strand=Plus/Minus Query 1671 CCTGGATTGCAGAGGAAGATTGTTGGGATACCGCCTTTAATTTGAACTGGCTTTCCGTAC 1730 || |||||||| || | ||| ||| || ||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1731 TTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCGTGCT------------TT 1778 |||| |||||| ||||| | | ||| || | | ||| | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1779 AGATATTGCGGATCGACGTCATCGATGACGTTGTACCACGCTTCATTACTGTACACTTTT 1838 | ||| ||| ||||||||| |||||||| |||||||| | || || ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTTTTC 74224 Query 1839 GGACTTAAGTCCAAATGGCCACAAAGATAATTATGTGGACCCAAAGACCTGGCCCACATT 1898 | | | || |||| | ||| | |||||||||||||||||| || | | ||| | | Sbjct 74223 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCAAACT 74164 Query 1899 GTCTTCCC 1906 || || || Sbjct 74163 GTTTTACC 74156 >seq442 Length=237535 Score = 91.5 bits (100), Expect = 3e-15 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1641 TCCAAGTATTCTTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATA 1700 |||||| || ||||||| | |||| || || |||||||| || ||| |||| || Sbjct 22751 TCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATC 22810 Query 1701 CCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCC 1760 |||||||||||||||||| ||||||||||||| ||| | ||| ||| || ||| || Sbjct 22811 TCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCG 22870 Query 1761 CCCATGAA 1768 || | ||| Sbjct 22871 CCTACGAA 22878 >seq35612 Length=1588 Score = 89.7 bits (98), Expect = 9e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1641 TCCAAGTATTCTTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATA 1700 |||||| || ||||||| | ||| || || |||||||| || | ||| |||| || Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1701 CCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCA 1747 |||||||||||||||||||| ||||||||||||| || | ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq54129 Length=2260 Score = 86.0 bits (94), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 13/191 (7%) Strand=Plus/Minus Query 1668 GGACCTGGATTGCAGAGGAAGATTGTTGGGATACCGCCTTTAATTTGAACTGGCTTTCCG 1727 || || |||||||| || | ||| |||| || |||||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1728 TACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAA---TTCG---TGCT----- 1776 ||||||| ||| | || |||| || || || | ||| || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1777 -TTAGATATTGCGGATCGACGTCATCGATGACGTTGTACCACGCTTCATTACTGTACACT 1835 ||| ||| | |||| ||| || ||||||||||| ||||| | ||||| ||| | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA-TGT 2082 Query 1836 TTTGGACTTAA 1846 |||||| |||| Sbjct 2081 TTTGGAATTAA 2071 >seq4104 Length=64936 Score = 86.0 bits (94), Expect = 1e-13 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1641 TCCAAGTATTCTTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATA 1700 |||||| | ||||||| | ||| || || |||||||| || | ||| |||| || Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1701 CCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTAT 1737 |||||||||||||||||||| ||||||||||||| || Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq6801 Length=49729 Score = 84.2 bits (92), Expect = 4e-13 Identities = 86/112 (77%), Gaps = 3/112 (3%) Strand=Plus/Plus Query 1641 TCCAAGTATTCTTTATAGCTTGAATTTGGACCT---GGATTGCAGAGGAAGATTGTTGGG 1697 |||||| | |||||||| ||| |||||| ||| |||| || | ||| ||| Sbjct 47061 TCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGGA 47120 Query 1698 ATACCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGT 1749 || |||||||||||||||||||| || |||||||||| |||||| ||| ||| Sbjct 47121 ATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 >seq815 Length=151552 Score = 84.2 bits (92), Expect = 4e-13 Identities = 143/207 (69%), Gaps = 14/207 (7%) Strand=Plus/Minus Query 1652 TTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATACCGCCTTTAAT 1711 ||||||| | ||| || || |||||||| || | || |||| || ||||||||||| Sbjct 85439 TTTATAGGAT-AATCAGGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAAT 85381 Query 1712 TTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTC 1771 |||| | || ||| ||||||||| ||| | | ||||| | || || || | ||| | Sbjct 85380 TTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTA 85321 Query 1772 GTGCT------------TTAGATATTGCGGATCGACGTCATCGATGACGTTGTACCACGC 1819 || | ||| ||| | | || |||||| ||||||||||| ||||| || Sbjct 85320 TTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGC 85261 Query 1820 TTCATTACTGTACACTTTTGGACTTAA 1846 ||||| |||| ||||||| |||| Sbjct 85260 ATCATTTGAGTAC-GTTTTGGAATTAA 85235 >seq30129 Length=3650 Score = 82.4 bits (90), Expect = 1e-12 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1641 TCCAAGTATTCTTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATA 1700 |||||| | ||| ||| | ||| || || |||||||| || | ||| |||| || Sbjct 2344 TCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATC 2403 Query 1701 CCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCC 1760 |||||||||||||||||| | ||||||||||||| ||| | ||||| | || || || Sbjct 2404 CCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCG 2463 Query 1761 CCCATGAA 1768 || | ||| Sbjct 2464 CCTACGAA 2471 >seq80468 Length=4946 Score = 78.8 bits (86), Expect = 2e-11 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1643 CAAGTATTCTTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATACC 1702 |||| || ||||||| | ||| || || ||||||| || | ||| |||| || || Sbjct 4241 CAAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCC 4300 Query 1703 GCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATT 1738 ||||||||| ||||| || ||||||||||||||||| Sbjct 4301 GCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATT 4336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8660555131410