Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_021205.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq5745 109 1e-20 seq22495 102 1e-18 seq3283 100 5e-18 seq3439 96.9 6e-17 seq33 96.9 6e-17 seq77518 93.3 7e-16 seq1993 91.5 3e-15 seq4295 84.2 4e-13 seq54129 82.4 1e-12 seq815 82.4 1e-12 seq20728 80.6 5e-12 seq442 77.0 6e-11 >seq5745 Length=45059 Score = 109 bits (120), Expect = 1e-20 Identities = 177/252 (70%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 1682 CCCTGGATTGCACAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACCGGCTTTCCGTA 1741 ||| |||||||| | | |||| ||||| ||||||||||||||||| || || ||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1742 CTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGTT------T 1795 ||| | |||||| ||||| | | ||| || || ||||| | || | |||||| | Sbjct 43600 CTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1796 TAGATAGTGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATT--ATTGTATACC 1853 || ||| ||| || ||||||||||||||| ||||| || || || ||| | | Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGT--- 43716 Query 1854 TTTGGACTT-AAATCAAGATGACCACACAAATAATTATGGGGTCCTAATGACCTGGCCCA 1912 ||| || || ||||| | | || | ||||||||| || || || || | ||||| Sbjct 43717 TTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 Query 1913 CATTGTCTTCCC 1924 | ||| || || Sbjct 43777 AACTGTTTTACC 43788 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 9/209 (4%) Strand=Plus/Minus Query 1664 TTTATAGCTGGAATTGGGCCCTGGATTGCACAGGAAGATAGCGGGAATGCCACCTTTAAT 1723 ||||||| ||| || || |||||||| || | |||| |||| || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1724 TTGAACCGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTC 1783 |||||| || ||||||||||| | ||| | ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1784 TTTAAAATGTT------TTAGATAGTGCGGATCGACGTCATCAATGACGTTGTACCAGGC 1837 || | |||| | ||| ||| | |||| || |||||| |||||||| ||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1838 ATCATTATTGTATAC-CTTTGGACTTAAA 1865 ||||| ||| ||| |||||| ||||| Sbjct 206 ATCAT--TTGAGTACGTTTTGGAATTAAA 180 >seq3283 Length=49157 Score = 100 bits (110), Expect = 5e-18 Identities = 176/253 (70%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 1680 GGCCCTGGATTGCACAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACCGGCTTTCCG 1739 || || |||||||| || | |||| ||||| || |||||||||||||| || || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1740 TACTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGTT----- 1794 ||||| | ||| | ||||| | | || || || | ||| | || | |||| | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1795 -TTAGATAGTGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTATTGTATAC- 1852 ||| ||| | |||| |||||| || |||||||| ||||| ||||||| ||| ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCAT--TTGAGTACG 2106 Query 1853 CTTTGGACTT-AAATCAAGATGACCACACAAATAATTATGGGGTCCTAATGACCTGGCCC 1911 |||||| || ||||| | | || | || || || || |||||||| | |||| Sbjct 2105 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1912 ACATTGTCTTCCC 1924 | ||| ||||| Sbjct 2045 ATGCTGTTTTCCC 2033 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 171/246 (70%), Gaps = 10/246 (4%) Strand=Plus/Minus Query 1687 GATTGCACAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACCGGCTTTCCGTACTTGG 1746 ||||||| || | |||| ||||| || |||||||||||||| || ||||||||||| | Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1747 TATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGTT------TTAGAT 1800 || | ||||| | | || || || | ||| | || | |||| | ||| || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1801 AGTGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTATTGTATAC-CTTTGGA 1859 | | |||| ||| ||||| |||||||| ||||| ||||||| ||| ||| |||||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCAT--TTGAGTACGTTTTGGA 779 Query 1860 CTT-AAATCAAGATGACCACACAAATAATTATGGGGTCCTAATGACCTGGCCCACATTGT 1918 || ||||| | | || | || || || || |||||||| | ||||| ||| Sbjct 778 ATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGT 719 Query 1919 CTTCCC 1924 ||||| Sbjct 718 TTTCCC 713 >seq33 Length=454124 Score = 96.9 bits (106), Expect = 6e-17 Identities = 122/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1682 CCCTGGATTGCACAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACCGGCTTTCCGTA 1741 ||| |||||||| || | |||| ||||| || | |||||||||||| || |||||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1742 CTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGTT------T 1795 ||| | |||||| ||||||| | || | || | ||| | || | |||| | | Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1796 TAGATAGTGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATT 1843 || ||| ||| |||||||||||||||||| ||||| || || || Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq77518 Length=14724 Score = 93.3 bits (102), Expect = 7e-16 Identities = 121/168 (72%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1682 CCCTGGATTGCACAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACCGGCTTTCCGTA 1741 ||| |||||||| || | |||| ||||| || |||||||||||||| | ||| |||| Sbjct 2401 CCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTA 2342 Query 1742 CTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGTT------T 1795 ||| | |||||| || |||| | ||| || || | ||| | || | |||| | | Sbjct 2341 CTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1796 TAGATAGTGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATT 1843 || ||| ||| ||| |||||||||||||| ||||| || || || Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq1993 Length=81530 Score = 91.5 bits (100), Expect = 3e-15 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 1682 CCCTGGATTGCACAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACCGGCTTTCCGTA 1741 ||| |||||||| || | |||| ||||| || ||||||||||||| || || ||||| Sbjct 74404 CCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTA 74345 Query 1742 CTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGTT------T 1795 ||| | |||||| ||||| | | ||| || | | ||| | || | |||| | | Sbjct 74344 CTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAAT 74285 Query 1796 TAGATAGTGCGGATCGACGTCATCAATGACGTTGTACCAGGC 1837 || ||| ||| |||||||||||||||||| ||||| || Sbjct 74284 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGC 74243 >seq4295 Length=67413 Score = 84.2 bits (92), Expect = 4e-13 Identities = 168/247 (68%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 1682 CCCTGGATTGCACAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACCGGCTTTCCGTA 1741 || ||||||| | || | ||| || || || |||||||||||| | || || ||||| Sbjct 46847 CCTTGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTA 46788 Query 1742 CTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGTTTT----- 1796 ||||| |||||| | ||| | |||||| | |||| ||||| ||| |||| Sbjct 46787 CTTGGCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTG 46728 Query 1797 -AGATAGTGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTATTGTATACCTT 1855 | |||| || |||||||| || ||||||||||| |||| ||| || || Sbjct 46727 CAAATAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTT 46668 Query 1856 TGGACTTAAAT-CAAGATGACCACACAAATAATTATGGGGTCCTAATGACCTGGCCCACA 1914 | | | |||| || || | ||| | || ||||| || | ||| |||| ||||| | Sbjct 46667 CGAATTAAAATCCATGAAGCCCA-TTATGTAGTTATGTGGGCATAAAGACCGTGCCCATA 46609 Query 1915 TTGTCTT 1921 ||||||| Sbjct 46608 TTGTCTT 46602 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 134/192 (70%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 1680 GGCCCTGGATTGCACAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACCGGCTTTCCG 1739 || || |||||||| || | |||| ||||| || ||||||||||||| || |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1740 TACTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGTT----- 1794 ||||| | ||| | || |||| || || || | ||| | || |||| | Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1795 -TTAGATAGTGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTATTGTATACC 1853 ||| ||| | |||| ||| || || |||||||| ||||| ||||||| |||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTAT-GT 2082 Query 1854 TTTGGACTTAAA 1865 |||||| ||||| Sbjct 2081 TTTGGAATTAAA 2070 >seq815 Length=151552 Score = 82.4 bits (90), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 9/193 (5%) Strand=Plus/Minus Query 1680 GGCCCTGGATTGCACAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACCGGCTTTCCG 1739 || || |||||||| || | ||| ||||| || |||||||||||| | || ||| || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1740 TACTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGTT----- 1794 ||||| | ||| | | ||||| | || || || | ||| | || | ||| | Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1795 -TTAGATAGTGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTATTGTATAC- 1852 ||| ||| | | || |||||| || |||||||| ||||| ||||||| ||| ||| Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCAT--TTGAGTACG 85247 Query 1853 CTTTGGACTTAAA 1865 |||||| ||||| Sbjct 85246 TTTTGGAATTAAA 85234 >seq20728 Length=3653 Score = 80.6 bits (88), Expect = 5e-12 Identities = 104/143 (73%), Gaps = 7/143 (5%) Strand=Plus/Plus Query 1707 GGAATGCCACCTTTAATTTGAACCGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTT 1766 ||||| || ||||||||||||| || ||||||||||| | ||| | |||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1767 TGGGCCCCCATGAATTCTTTAAAATGTT------TTAGATAGTGCGGATCGACGTCATCA 1820 || || || | ||| | || | |||| | ||| ||| | |||| ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1821 ATGACGTTGTACCAGGCATCATT 1843 |||||||| || || |||||||| Sbjct 1561 ATGACGTTATATCATGCATCATT 1583 >seq442 Length=237535 Score = 77.0 bits (84), Expect = 6e-11 Identities = 130/186 (70%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 1664 TTTATAGCTGGAATTGGGCCCTGGATTGCACAGGAAGATAGCGGGAATGCCACCTTTAAT 1723 ||||||| |||| || || |||||||| || |||| ||||| | |||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1724 TTGAACCGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTC 1783 |||||| | ||||||||||| | ||| | ||| ||| | ||| || || | ||| | Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTG 22881 Query 1784 TTTAAAATGTT------TTAGATAGTGCGGATCGACGTCATCAATGACGTTGTACCAGGC 1837 || | |||| | ||| ||| | || | |||||| || || ||||| |||| || Sbjct 22882 TTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TGC 22939 Query 1838 ATCATT 1843 |||||| Sbjct 22940 ATCATT 22945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8663752087900