Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_021245.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq3283 114 2e-22 seq3439 113 8e-22 seq22495 102 1e-18 seq54129 93.3 7e-16 seq3059 93.3 7e-16 seq953 93.3 7e-16 seq5745 91.5 3e-15 seq442 89.7 9e-15 seq30129 87.8 3e-14 seq77518 86.0 1e-13 seq35612 86.0 1e-13 seq33 86.0 1e-13 seq20728 82.4 1e-12 seq4104 80.6 5e-12 >seq3283 Length=49157 Score = 114 bits (126), Expect = 2e-22 Identities = 198/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 1657 TCCAAGTATTCTTTATACGAT-GATGTTGGTCCTGGATTGCAGAGGAAGATTGTTGGGAT 1715 |||||| | |||||| ||| ||| ||||| |||||||| || | ||| |||| || Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1716 CCCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGTGC 1775 ||| ||||||||||||| ||||||||||||||||| ||| ||||| | | |||||| Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1776 CCCCATGAACTCTTTAAAGTGCTT------TAGGAAGTGGGGGTCTACGTCATCAATGAC 1829 || | ||||| || | | ||||| || | | || ||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1830 GTTGTACCAGGCATCATTACTGTATAC-TTTTGGACTGAGG-TCAAGATGACCACACAAA 1887 ||| ||||| |||||||| || ||| ||||||| | | || | | || | Sbjct 2131 GTTATACCATGCATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATG 2074 Query 1888 TAATTATGTGGGCCTAACGATCTAGCCCACATTGTCTTCCCT 1929 || || ||||||||||| || | |||||| ||| |||||| Sbjct 2073 TAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 2032 >seq3439 Length=62978 Score = 113 bits (124), Expect = 8e-22 Identities = 189/270 (70%), Gaps = 10/270 (4%) Strand=Plus/Minus Query 1668 TTTATACGATGATGTTGGTCCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAAT 1727 |||||| ||| || ||||| ||||||| || | ||| |||| ||||| |||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1728 TTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGTGCCCCCATGAACTC 1787 ||||| |||||| |||||||||| |||| ||||| | | |||||| || | ||||| Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1788 TTTAAAGTGCTT------TAGGAAGTGGGGGTCTACGTCATCAATGACGTTGTACCAGGC 1841 || | | ||||| || | | || || ||||| |||||||| ||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1842 ATCATTACTGTATAC-TTTTGGACTGAGG-TCAAGATGACCACACAAATAATTATGTGGG 1899 |||||| || ||| ||||||| | | || | | || | || || |||||| Sbjct 799 ATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGG 742 Query 1900 CCTAACGATCTAGCCCACATTGTCTTCCCT 1929 ||||| || | |||||| ||| |||||| Sbjct 741 CCTAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 1657 TCCAAGTATTCTTTATACGATGATGTTGGTCCTGGATTGCAGAGGAAGATTGTTGGGATC 1716 || ||| || |||||| ||| | ||||| |||||||| || | ||| || | ||| Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1717 CCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGTGCC 1776 || | ||||||||||| |||||| |||||||||| ||| ||||||| | |||||| Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1777 CCCATGAACTCTTTAAAGTGCT------TTAGGAAGTGGGGGTCTACGTCATCAATGACG 1830 || | ||||| || | | |||| ||| | | || | |||||| |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1831 TTGTACCAGGCATCATTACTGTATAC-TTTTGGA 1863 || ||||| |||||||| || ||| ||||||| Sbjct 217 TTATACCATGCATCATT--TGAGTACGTTTTGGA 186 >seq54129 Length=2260 Score = 93.3 bits (102), Expect = 7e-16 Identities = 136/188 (72%), Gaps = 11/188 (6%) Strand=Plus/Minus Query 1684 GGTCCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGAATTGGTTTCCCG 1743 ||||| |||||||| || | ||| |||| ||||| |||||||||||||||||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1744 TACTTTGTGTTGCTTTGCCAGTCCCTCTGTGCCCCCATGAACTCTT--TAAAG-TGCTTT 1800 ||||||| ||| || |||| |||||| || | ||||| || ||| | | ||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1801 AGGAAGT-----GGGGGTCTACGTCATCAATGACGTTGTACCAGGCATCATTACTGTATA 1855 | || | || || || || || |||||||| ||||| ||||||| |||| Sbjct 2140 ATTAAATAATTCGGAGG--GACATCGTCGATGACGTTATACCATACATCATTTGAGTAT- 2084 Query 1856 CTTTTGGA 1863 ||||||| Sbjct 2083 GTTTTGGA 2076 >seq3059 Length=182465 Score = 93.3 bits (102), Expect = 7e-16 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1684 GGTCCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGAATTGGTTTCCCG 1743 ||||| |||||||| || | ||| |||| ||||| |||||||||||||||||||| ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1744 TACTTTGTGTTGCTTTGCCAGTCCCTCTGTGCCCCCATGAACTCTTTAAAGTGCTT 1799 || |||| ||| | ||||| | |||||| || | ||||| || | | ||||| Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTT 20304 >seq953 Length=224861 Score = 93.3 bits (102), Expect = 7e-16 Identities = 191/281 (68%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 1657 TCCAAGTATTCTTTATACGATGATGTTGGTCCTGGATTGCAGAGGAAGATTGTTGGGATC 1716 || ||| || |||||| ||| | ||||| |||||||| | | ||| |||| ||| Sbjct 1813 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATC 1872 Query 1717 CCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGTGCC 1776 || |||||||||||||||| ||| |||||||||| ||| ||||| | | |||| | Sbjct 1873 CCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACG 1932 Query 1777 CCCATGAACTCTTTAAAGTGCTTT-------AGGAAGTGGGGGTCTACGTCATCAATGAC 1829 || | ||||| || | | | |||| | || | || | ||||| || || || Sbjct 1933 CCTACGAACTGTTGATAATACTTTTTAATTAAATAATTCGGAG-GGACGTCGTCGATAAC 1991 Query 1830 GTTGTACCAGGCATCATTACTGTATACTTTTGGACTGAGGTCAAGATGACCACA-CAAAT 1888 ||| ||||| |||||||| ||| ||| | | | | || | | | | || | | Sbjct 1992 GTTATACCATGCATCATTTGAGTACGTTTTCGAATTAAAATCCATA-AATCTCATTATGT 2050 Query 1889 AATTATGTGGGCCTAACGATCTAGCCCACATTGTCTTCCCT 1929 | || ||||||||||| || | |||||| ||| |||||| Sbjct 2051 AGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 2091 >seq5745 Length=45059 Score = 91.5 bits (100), Expect = 3e-15 Identities = 171/250 (68%), Gaps = 10/250 (4%) Strand=Plus/Plus Query 1687 CCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGAATTGGTTTCCCGTAC 1746 || |||||||| | | ||| ||| ||||||||||||||||||| |||||| |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1747 TTTGTGTTGCTTTGCCAGTCCCTCTGTGCCCCCATGAACTCTTTAAAGTGCTTT------ 1800 |||| || ||||| | | ||||| || ||||||| || | | || ||| Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1801 -AGGAAG-TGGGGGTCTACGTCATCAATGACGTTGTACCAGGCATCATTACTGTATACTT 1858 | ||| ||| || | ||||||||||||||| ||||| || || || ||| || Sbjct 43661 AAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTT 43718 Query 1859 TTGGACTGAGGTCAAGATGACCACACAAATAATTATGTGGGCCTAACGATCTAGCCCACA 1918 | | | | | || | | || | |||||||||||| || ||||| | ||||| | Sbjct 43719 TCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAA 43778 Query 1919 TTGTCTTCCC 1928 ||| || || Sbjct 43779 CTGTTTTACC 43788 >seq442 Length=237535 Score = 89.7 bits (98), Expect = 9e-15 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1657 TCCAAGTATTCTTTATACGATGATGTTGGTCCTGGATTGCAGAGGAAGATTGTTGGGATC 1716 |||||| || |||||| ||| | | ||||| |||||||| || ||| |||| ||| Sbjct 22751 TCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATC 22810 Query 1717 CCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGTGCC 1776 | ||||||||||||| || ||| |||||||||| ||| ||| ||| | ||||| Sbjct 22811 TCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCG 22870 Query 1777 CCCATGAACTCTTTAAAGTGCTTT 1800 || | ||||| || | | |||||| Sbjct 22871 CCTACGAACTGTTAATAATGCTTT 22894 >seq30129 Length=3650 Score = 87.8 bits (96), Expect = 3e-14 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1684 GGTCCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGAATTGGTTTCCCG 1743 ||||| |||||||| || | ||| |||| ||||| ||||||||||||| | |||| ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1744 TACTTTGTGTTGCTTTGCCAGTCCCTCTGTGCCCCCATGAACTCTTTAAAGTGCTT 1799 ||||||| ||| ||||| | | |||||| || | ||||| || | | ||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 >seq77518 Length=14724 Score = 86.0 bits (94), Expect = 1e-13 Identities = 190/283 (67%), Gaps = 13/283 (5%) Strand=Plus/Minus Query 1657 TCCAAGTATTCTTTATACGATGATGTTGGTCCT---GGATTGCAGAGGAAGATTGTTGGG 1713 |||||| || ||||||| ||| | ||| || |||||||| || | ||| ||| Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1714 ATCCCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGT 1773 ||||| ||||||||||||| || ||| ||||||||| || || |||| | ||| Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1774 GCCCCCATGAACTCTTTAAAGTGCTTT-------AGGAAG-TGGGGGTCTACGTCATCAA 1825 || || | ||||| || | | |||||| | ||| ||| || || ||||||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGG--GACATCATCAA 2256 Query 1826 TGACGTTGTACCAGGCATCATTACTGTATACTTTTGGACTGAGGTCAAGATGACCACACA 1885 ||||||| ||||| || || || |||| ||| | | | || | | || | Sbjct 2255 TGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTA 2196 Query 1886 AATAATTATGTGGGCCTAACGATCTAGCCCACATTGTCTTCCC 1928 |||||||||||| || ||| | | ||||| | ||| || || Sbjct 2195 TATAATTATGTGGACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1657 TCCAAGTATTCTTTATACGATGATGTTGGTCCTGGATTGCAGAGGAAGATTGTTGGGATC 1716 |||||| || |||||| ||| | ||||| |||||||| || | ||| |||| || Sbjct 1480 TCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATG 1539 Query 1717 CCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCA 1763 || ||||||||||||| |||||| |||||||||| |||| ||||| Sbjct 1540 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq33 Length=454124 Score = 86.0 bits (94), Expect = 1e-13 Identities = 168/247 (68%), Gaps = 10/247 (4%) Strand=Plus/Minus Query 1687 CCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGAATTGGTTTCCCGTAC 1746 || |||||||| || | ||| ||| ||||| | ||||||||||| |||||| |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1747 TTTGTGTTGCTTTGCCAGTCCCTCTGTGCCCCCATGAACTCTTTAAAGTGCTTT------ 1800 |||| || ||||||| | |||| | || | ||||| || | | || ||| Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1801 -AGGAAG-TGGGGGTCTACGTCATCAATGACGTTGTACCAGGCATCATTACTGTATACTT 1858 | ||| ||| || ||||||||||||||||| ||||| || || || |||| | Sbjct 403182 AAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTC 403125 Query 1859 TTGGACTGAGGTCAAGATGACCACACAAATAATTATGTGGGCCTAACGATCTAGCCCACA 1918 | | | | | || | | || | ||||||||||| || ||||| | ||||| | Sbjct 403124 TCGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAA 403065 Query 1919 TTGTCTT 1925 ||| || Sbjct 403064 CTGTTTT 403058 >seq20728 Length=3653 Score = 82.4 bits (90), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 9/146 (6%) Strand=Plus/Plus Query 1709 TTGGGATCCCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCC 1768 |||| ||||| ||||||||||||| |||||| |||||||||| ||| |||| || | Sbjct 1440 TTGGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGC 1498 Query 1769 TCTGTGCCCCCATGAACTCTTTAAAGTGCTTT-------AGGAAGTGGGGGTCTACGTCA 1821 |||||| || | ||||| || | | |||||| | || | || | |||||| Sbjct 1499 GCTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAG-GGACGTCA 1557 Query 1822 TCAATGACGTTGTACCAGGCATCATT 1847 || |||||||| || || |||||||| Sbjct 1558 TCGATGACGTTATATCATGCATCATT 1583 >seq4104 Length=64936 Score = 80.6 bits (88), Expect = 5e-12 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 1657 TCCAAGTATTCTTTATACGATGATGTTGGTCCTGGATTGCAGAGGAAGATTGTTGGGATC 1716 |||||| | |||||| ||| | ||||| |||||||| || | ||| |||| ||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1717 CCACCTTTAATTTGAATTGGTTTCCCGTACTTTG 1750 || ||||||||||||| |||||| |||||||||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 20764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8657358174920