Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_021341.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq3283 102 1e-18 seq3439 96.9 6e-17 seq35612 93.3 7e-16 seq4104 93.3 7e-16 seq3059 84.2 4e-13 seq30129 78.8 2e-11 seq77518 77.0 6e-11 seq54129 77.0 6e-11 seq22495 77.0 6e-11 >seq3283 Length=49157 Score = 102 bits (112), Expect = 1e-18 Identities = 174/250 (70%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 1606 GAATTCTGCATTCTTTAGAGCCCAAGCTTTTAGTGCGGAATTCTTATCCTCGTCCAAGTA 1665 |||||||||||| | ||||| ||||| ||| ||||| ||| |||||| | Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 2303 Query 1666 CTCTTTATATGAT-GATGTTGGTCCAGGATTGCATAGGAAGATTGTCGGGATACCTCCTT 1724 | |||||| ||| ||| |||||||||||||| || | ||| | || || || |||| Sbjct 2302 CGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTT 2244 Query 1725 TAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGA 1784 ||||||||| ||||||||||||||||| ||| ||||| | | || || || | || Sbjct 2243 TAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGA 2184 Query 1785 ATTCTTTGAAGTGCT------TTAGGTAGTGGGGATCTACGTCATCAACCACGTTGTACC 1838 | | || | |||| ||| || | ||| ||||| || | ||||| |||| Sbjct 2183 ACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACC 2124 Query 1839 ACGCATCATT 1848 | |||||||| Sbjct 2123 ATGCATCATT 2114 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 170/248 (69%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 1607 AATTCTGCATTCTTTAGAGCCCAAGCTTTTAGTGCGGAATTCTTATCCTCGTCCAAGTAC 1666 ||||||||||| | ||||| ||||| ||| ||||| ||| || ||| || Sbjct 1041 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAAC 982 Query 1667 TCTTTATATGATGATGTTGGTCCAGGATTGCATAGGAAGATTGTCGGGATACCTCCTTTA 1726 |||||| ||| || |||||| ||||||| || | ||| | || || || |||||| Sbjct 981 GTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTA 922 Query 1727 ATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAAT 1786 ||||||| |||||| |||||||||| |||| ||||| | | || || || | ||| Sbjct 921 ATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAAC 862 Query 1787 TCTTTGAAGTGCT------TTAGGTAGTGGGGATCTACGTCATCAACCACGTTGTACCAC 1840 | || | |||| ||| || | ||| || ||||| | ||||| ||||| Sbjct 861 TGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCAT 802 Query 1841 GCATCATT 1848 |||||||| Sbjct 801 GCATCATT 794 >seq35612 Length=1588 Score = 93.3 bits (102), Expect = 7e-16 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1606 GAATTCTGCATTCTTTAGAGCCCAAGCTTTTAGTGCGGAATTCTTATCCTCGTCCAAGTA 1665 |||||||||||| | ||||| ||||| ||| ||||| ||| |||||| | Sbjct 1428 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 1487 Query 1666 CTCTTTATATGATGATGTTGGTCCAGGATTGCATAGGAAGATTGTCGGGATACCTCCTTT 1725 |||||| ||| | |||||||||||||| || | ||| | || || || ||||| Sbjct 1488 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTT 1547 Query 1726 AATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCA 1764 |||||||| |||||| |||||||||| |||| ||||| Sbjct 1548 AATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 93.3 bits (102), Expect = 7e-16 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 1606 GAATTCTGCATTCTTTAGAGCCCAAGCTTTTAGTGCGGAATTCTTATCCTCGTCCAAGTA 1665 |||||||||||| | ||||| ||||| ||| ||||| ||| |||||| | Sbjct 20909 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 20850 Query 1666 CTCTTTATATGATGATGTTGGTCCAGGATTGCATAGGAAGATTGTCGGGATACCTCCTTT 1725 | |||||| ||| | |||||||||||||| || | ||| | || || || ||||| Sbjct 20849 CGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 20790 Query 1726 AATTTGAATTGGTTTCCCGTACTTTG 1751 |||||||| |||||| |||||||||| Sbjct 20789 AATTTGAACTGGTTTTCCGTACTTTG 20764 >seq3059 Length=182465 Score = 84.2 bits (92), Expect = 4e-13 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 1606 GAATTCTGCATTCTTTAGAGCCCAAGCTTTTAGTGCGGAATTCTTATCCTCGTCCAAGTA 1665 ||||||| |||| | ||||| ||||| ||| ||||| ||| |||||| | Sbjct 20498 GAATTCTACATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 20439 Query 1666 CTCTTTATATGATGATGTTGGTCCAGGATTGCATAGGAAGATTGTCGGGATACCTCCTTT 1725 | ||||| ||| | |||||||||||||| || | ||| | || || || ||||| Sbjct 20438 CGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 20379 Query 1726 AATTTGAATTGGTTTCCCGTACTTTG 1751 ||||||||||||||| ||||| |||| Sbjct 20378 AATTTGAATTGGTTTTCCGTAATTTG 20353 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 112/158 (71%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 1607 AATTCTGCATTCTTTAGAGCCCAAGCTTTTAGTGCGGAATTCTTATCCTCGTCCAAGTAC 1666 ||||||||||| | ||||| | ||| ||| ||||| ||| |||||| || Sbjct 2293 AATTCTGCATTTTGTAGAGTCTAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAAC 2352 Query 1667 TCTTTATATGATGATGTTGGTCCAGGATTGCATAGGAAGATTGTCGGGATACCTCCTTTA 1726 ||| || ||| | |||||||||||||| || | ||| | || || || |||||| Sbjct 2353 GTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTA 2412 Query 1727 ATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCA 1764 ||||||| | |||| |||||||||| ||| ||||| Sbjct 2413 ATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450 >seq77518 Length=14724 Score = 77.0 bits (84), Expect = 6e-11 Identities = 212/322 (66%), Gaps = 11/322 (3%) Strand=Plus/Minus Query 1606 GAATTCTGCATTCTTTAGAGCCCAAGCTTTTAGTGCGGAATTCTTATCCTCGTCCAAGTA 1665 |||||||||||| | || || ||| | |||| ||||| ||| |||||| | Sbjct 2485 GAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAAATCCAAGAA 2426 Query 1666 CTCTTTATATGATGATGTTGGTCC---AGGATTGCATAGGAAGATTGTCGGGATACCTCC 1722 ||||||| ||| | ||| || ||||||||| || | ||| || || || || Sbjct 2425 TGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCC 2366 Query 1723 TTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1782 ||||||||||| || ||| ||||||||| || || |||| | ||| || || | Sbjct 2365 TTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTAC 2306 Query 1783 GAATTCTTTGAAGTGCT------TTAGGTAGTGGGGATCTACGTCATCAACCACGTTGTA 1836 ||| | || | |||| ||| || ||| || ||||||| ||||| || Sbjct 2305 GAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATA 2246 Query 1837 CCACGCATCATTGCTGTATACTTTAGGGCTTAGAT-CAAGGTGCCCACATAAATAATTAT 1895 |||||| || || |||| ||| | | || || ||||| || |||||||| Sbjct 2245 CCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCA-TTATATAATTAT 2187 Query 1896 GTGGACCCAGTGACCGTGCCCA 1917 ||||||||| | |||||||| Sbjct 2186 GTGGACCCAACTAACGTGCCCA 2165 >seq54129 Length=2260 Score = 77.0 bits (84), Expect = 6e-11 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1685 GGTCCAGGATTGCATAGGAAGATTGTCGGGATACCTCCTTTAATTTGAATTGGTTTCCCG 1744 |||||||||||||| || | ||| | || || || |||||||||||||||||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1745 TACTTTG 1751 ||||||| Sbjct 2200 TACTTTG 2194 >seq22495 Length=567 Score = 77.0 bits (84), Expect = 6e-11 Identities = 166/249 (67%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 1606 GAATTCTGCATTCTTTAGAGCCCAAGCTTTTAGTGCGGAATTCTTATCCTCGTCCAAGTA 1665 ||||||| |||| | || || ||||| ||| ||||| ||| || ||| | Sbjct 449 GAATTCTACATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAA 390 Query 1666 CTCTTTATATGATGATGTTGGTCCAGGATTGCATAGGAAGATTGTCGGGATACCTCCTTT 1725 |||||| ||| | |||||||||||||| || | ||| | | || || | ||| Sbjct 389 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTT 330 Query 1726 AATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1785 |||||||| |||||| |||||||||| ||| ||||||| | || || || | ||| Sbjct 329 AATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAA 270 Query 1786 TTCTTTGAAGTGCT------TTAGGTAGTGGGGATCTACGTCATCAACCACGTTGTACCA 1839 | || | |||| ||| || | ||| | |||||| | ||||| ||||| Sbjct 269 CTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCA 210 Query 1840 CGCATCATT 1848 |||||||| Sbjct 209 TGCATCATT 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8695721652800