Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_021579.1 Length=2669 Score E Sequences producing significant alignments: (Bits) Value seq33 114 2e-22 seq5745 111 3e-21 seq3283 104 4e-19 seq77518 102 1e-18 seq22495 98.7 2e-17 seq3439 98.7 2e-17 seq1993 96.9 6e-17 seq54129 82.4 1e-12 seq4295 82.4 1e-12 seq490 82.4 1e-12 seq5493 77.0 5e-11 >seq33 Length=454124 Score = 114 bits (126), Expect = 2e-22 Identities = 238/350 (68%), Gaps = 16/350 (5%) Strand=Plus/Minus Query 1481 TAGAGGGGGGAGTTGAGGAAGACGAATTTTGCATTGTGGAGAGTCCA-GTTCTTGAGTGA 1539 || || |||| || || |||| ||||| |||||| || | |||||| | | | | | Sbjct 403409 TATAGAGGGGTGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTT 403350 Query 1540 CAGATTCTCCTCTTTGTCGAGGAACTCTTTATAA-------CTGGACCCCTCGCCTGGAT 1592 | ||| ||| | |||| |||| |||||||| ||||||||| |||| Sbjct 403349 GA-ATTTGAATCTATATCGAAGAACGCTTTATAAGACAACTCTGGACCCCA-----GGAT 403296 Query 1593 TGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTA-TTTGCAA 1651 ||||||||||||| | || || |||| |||||||||||| || |||||||| ||||| | Sbjct 403295 TGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGC-A 403237 Query 1652 TTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTCATCTTTAGGTAG 1711 ||||| ||||||| | || | || | || | || | || || | ||| || Sbjct 403236 TTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAA 403177 Query 1712 TGCGGTGCGACGTCATCAATGACGTTATAATCCACATCATTTGAATAAACCCTAGAATTG 1771 || | ||||||||||||||||||||| | | || || || || || ||||| Sbjct 403176 GCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTC 403117 Query 1772 AAATCCAGGTGTCCACTCAAATAATTGTGAGATCCCAAAGCACGTGCCCA 1821 ||||||| || | | ||||| || | ||||| | ||||||||| Sbjct 403116 AAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq5745 Length=45059 Score = 111 bits (122), Expect = 3e-21 Identities = 254/377 (67%), Gaps = 23/377 (6%) Strand=Plus/Plus Query 1480 ATAGAGGGGGGAGTTGAGGAAGACGAATTTTGCATTGTGGAGAGTCCAG---TTCTTGAG 1536 |||||| |||| || || |||| |||| ||||| || | |||| | |||| Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1537 TGACAGATTCTCCTCTTTGTCGAGGAACTCTTTATAA-------CTGGACCCCTCGCCTG 1589 ||| ||| ||| | || | |||| |||||||| ||||||||| | | Sbjct 43492 TGA---ATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCC----CAG 43544 Query 1590 GATTGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTA-TTTG 1648 ||||||||| |||||| | || || || |||||||||||||| || || ||||| |||| Sbjct 43545 GATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTG 43604 Query 1649 CAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTCATCTTTAGG 1708 | |||||| ||||| | | ||| || || || || | || | || || | ||| Sbjct 43605 C-ATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAA 43663 Query 1709 TAGTGCGGTGCGACGTCATCAATGACGTTATAATCCA--CATCATTTGAATAAACCCTAG 1766 || || | || |||||||||||||||||| ||| | || || || || | | Sbjct 43664 TAAGCTGGAGGGATGTCATCAATGACGTTATA--CCATGCGTCGTTCGATTATGTTTTCG 43721 Query 1767 AATTGAAATCCAGGTGTCCACTCAAATAATTGTGAGATCCCAAAGCACGTGCCCACATCG 1826 |||| ||||||| || | | |||||| || | ||||| | ||||||||| | | Sbjct 43722 AATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACTG 43781 Query 1827 TCTTGCCGGTTCTTGAA 1843 | || ||| |||| ||| Sbjct 43782 TTTTACCGATTCTAGAA 43798 >seq3283 Length=49157 Score = 104 bits (114), Expect = 4e-19 Identities = 250/369 (68%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 1480 ATAGAGGGGGGAGTTGAGGAAGACGAATTTTGCATTGTGGAGAGTCCA-GTTCTTGAGTG 1538 |||| |||||| || || |||| ||||| |||||| || |||||||| ||| | | | Sbjct 2386 ATAGTGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 2327 Query 1539 ACAGATTCTCCTCTTTGTCGAGGAACTCTTTATA--ACTGGACCCCTCGCCTGGATTGCA 1596 | ||| ||| || | |||| |||||| | || | || | |||||||| Sbjct 2326 TGA-ATTGGACTCCAAATCCAAGAACGTTTTATAGGATTGATCAGGTC--CAGGATTGCA 2270 Query 1597 AAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTA-TTTGCAATTTG 1655 ||| ||||| || || ||||||||||||||||| || || ||||| |||||| || | Sbjct 2269 AAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCA-TTGG 2211 Query 1656 ATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTCATCTTTAGGTAGTGCG 1715 ||||| | | || || || | || | || | |||||| | ||| || | || Sbjct 2210 CCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCG 2151 Query 1716 GTGCGACGTCATCAATGACGTTATAATCCA--CATCATTTGAATAAACCCTAGAATTGAA 1773 | | |||||| || ||||||||||| ||| |||||||||| || | ||||| || Sbjct 2150 GAGGGACGTCGTCGATGACGTTATA--CCATGCATCATTTGAGTACGTTTTGGAATTAAA 2093 Query 1774 ATCCAGGTGTCCACTCAAATAATTGTGAGATCCCAAAGCACGTGCCCACATCGTCTTGCC 1833 ||||| ||| | | || ||||| | || || | ||| ||||| || || || Sbjct 2092 ATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2033 Query 1834 GGTTCTTGA 1842 ||||||| Sbjct 2032 TATTCTTGA 2024 >seq77518 Length=14724 Score = 102 bits (112), Expect = 1e-18 Identities = 247/369 (67%), Gaps = 15/369 (4%) Strand=Plus/Minus Query 1480 ATAGAGGGGGGAGTTGAGGAAGACGAATTTTGCATTGTGGAGAGTCCA-GTTCTTGAGTG 1538 |||||| ||| || || |||| ||||| |||||| || | |||||| | | || | | Sbjct 2509 ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATT 2450 Query 1539 ACAGATTCTCCTCTTTGTCGAGGAACTCTTTATAA-------CTGGACCCCTCGCCTGGA 1591 | ||| ||| || | ||| |||||||| ||||||||| | ||| Sbjct 2449 TGA-ATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCCC----CAGGA 2395 Query 1592 TTGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTA-TTTGCA 1650 |||||||| ||||| | || || ||||||||||||||||| | ||| |||| |||||| Sbjct 2394 TTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCA 2335 Query 1651 ATTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTCATCTTTAGGTA 1710 ||||| || |||| | ||| || || | || | || | ||||| | ||| || Sbjct 2334 -TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATA 2276 Query 1711 GTGCGGTGCGACGTCATCAATGACGTTATAATCCACATCATTTGAATAAACCCTAGAATT 1770 || | ||| ||||||||||||||||| | | || || || || | |||| Sbjct 2275 AGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATT 2216 Query 1771 GAAATCCAGGTGTCCACTCAAATAATTGTGAGATCCCAAAGCACGTGCCCACATCGTCTT 1830 ||||||| || | | |||||| || | ||||| ||||||||| | || || Sbjct 2215 CAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAAACTGTTTT 2156 Query 1831 GCCGGTTCT 1839 ||| |||| Sbjct 2155 ACCGATTCT 2147 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 1586 CCTGGATTGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTA- 1644 || ||||||||||| ||||| | || |||| |||||||||||| || |||||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1645 TTTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTCATCTT 1704 |||||| || | ||||||| | || || || | || | || || |||||| | | Sbjct 307 TTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1705 TAGGTAGTGCGGTGCGACGTCATCAATGACGTTATAATCCA--CATCATTTGAATAAACC 1762 || || | ||| | || |||||| ||||||||||| ||| |||||||||| || Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATA--CCATGCATCATTTGAGTACGTT 191 Query 1763 CTAGAATTGAAATCCA 1778 | ||||| ||||||| Sbjct 190 TTGGAATTAAAATCCA 175 >seq3439 Length=62978 Score = 98.7 bits (108), Expect = 2e-17 Identities = 249/370 (67%), Gaps = 14/370 (4%) Strand=Plus/Minus Query 1480 ATAGAGGGGGGAGTTGAGGAAGACGAATTTTGCATTGTGGAGAGTCCA-GTTCTTGAGTG 1538 ||||||||||| || || |||| |||| |||||| || |||||||| ||| | | | Sbjct 1066 ATAGAGGGGGGTGTCGACGAAGTGAAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 1007 Query 1539 ACAGATTCTCCTCTTTGTCGAGGAACTCTTTATAACTGGACCCCTCG---CCTGGATTGC 1595 | ||| ||| || | |||| |||||| ||| || || |||||| Sbjct 1006 TGA-ATTGGACTCCAAATCTAAGAACGTTTTATA---GGATAATTCAGGTCCAAGATTGC 951 Query 1596 AAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTA-TTTGCAATTT 1654 |||| ||||| || || ||||||||||||||||| || |||||||| ||||| || Sbjct 950 AAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGC-GTTG 892 Query 1655 GATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTCATCTTTAGGTAGTGC 1714 | ||||| | | || || || | || | || | |||||| | ||| || | | Sbjct 891 GCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTC 832 Query 1715 GGTGCGACGTCATCAATGACGTTATAATCCA--CATCATTTGAATAAACCCTAGAATTGA 1772 || | ||| ||||| ||||||||||| ||| |||||||||| || | ||||| | Sbjct 831 GGAGGGACATCATCGATGACGTTATA--CCATGCATCATTTGAGTACGTTTTGGAATTAA 774 Query 1773 AATCCAGGTGTCCACTCAAATAATTGTGAGATCCCAAAGCACGTGCCCACATCGTCTTGC 1832 |||||| ||| | | || ||||| | || || | ||| ||||| || || | Sbjct 773 AATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCC 714 Query 1833 CGGTTCTTGA 1842 | ||||||| Sbjct 713 CTATTCTTGA 704 >seq1993 Length=81530 Score = 96.9 bits (106), Expect = 6e-17 Identities = 180/262 (69%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 1583 TCGCCTGGATTGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCG 1642 || || ||||||||||||||||| | || || ||| ||||||||||||| || || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1643 TA-TTTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTCAT 1701 || ||||| |||||| ||||| | | ||| || | | || | || | || || | Sbjct 74346 TACTTTGC-ATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1702 CTTTAGGTAGTGCGGTGCGACGTCATCAATGACGTTATAATCCACATCATTTGAATAAAC 1761 ||| || || | ||||||||||||||||||||| | | | || || || Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGT 74228 Query 1762 CCTAGAATTGAAATCCAGGTGTCCACTCAAATAATTGTGAGATCCCAAAGCACGTGCCCA 1821 | ||||| ||||||| || | | |||||| || | ||||| | ||||| ||| Sbjct 74227 TTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCA 74168 Query 1822 CATCGTCTTGCCGGTTCTTGAA 1843 | || || ||| |||| ||| Sbjct 74167 AACTGTTTTACCGATTCTAGAA 74146 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 1586 CCTGGATTGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTA- 1644 || ||||||||||| ||||| || || |||||||||||||||| || |||||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1645 TTTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTCATCTT 1704 ||||| ||| | || |||| || || || | || | || | |||||| | | Sbjct 2197 TTTGC-ATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAAT 2139 Query 1705 TAGGTAGTGCGGTGCGACGTCATCAATGACGTTATAATCCACATCATTTGAATA 1758 || || | ||| | ||| || || ||||||||||| ||||||||||| || Sbjct 2138 TAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 >seq4295 Length=67413 Score = 82.4 bits (90), Expect = 1e-12 Identities = 232/352 (66%), Gaps = 11/352 (3%) Strand=Plus/Minus Query 1486 GGGGGAGTTGAGGAAGACGAATTTTGCATTGTGGAGAGTCCAGTTCTTGAGTGACAGATT 1545 ||||| || | ||||| ||||| |||||| | ||||| ||||| | | | ||| Sbjct 46949 GGGGGTGTCGGCGAAGAAGAATTCTGCATTTCCTAATGTCCATTTCTTCAAAGTTAAATT 46890 Query 1546 CTCCTCTTTGTCGAGGAACTCTTTATAACTGGACCC-CTCG----CCTGGATTGCAAAGC 1600 |||| ||||| || ||||||| | || | || | | ||||||| | ||| Sbjct 46889 TATATCTTGTTCGAGAAAAGCTTTATAC--GAACACTCTGGTGTCCTTGGATTGTAGAGC 46832 Query 1601 ACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTATTTGCAATTTGATTGC 1660 |||||| | || || || |||||||||||| | || || ||||| ||| |||||| | | Sbjct 46831 ACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTGGCATTTGAGTTC 46772 Query 1661 CAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTCATCTTTAGGTAGTGCGGTGCG 1720 || | |||||| |||| | ||||| || | || ||| | ||| | | Sbjct 46771 CAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAATAGGATAGAGAT 46712 Query 1721 ACGTCATCAATGACGTTATAATCCA--CATCATTTGAATAAACCCTAGAATTGAAATCCA 1778 |||||||| || ||||| || ||| ||| ||| ||| | | ||||| ||||||| Sbjct 46711 ACGTCATCTATAACGTTGTA--CCATGCATTATTCGAAAATGATTTCGAATTAAAATCCA 46654 Query 1779 GGTGTCCACTCAAATAATTGTGAGATCCCAAAGCACGTGCCCACATCGTCTT 1830 | || | | || || || | | |||| |||||||| || ||||| Sbjct 46653 TGAAGCCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGTCTT 46602 >seq490 Length=137872 Score = 82.4 bits (90), Expect = 1e-12 Identities = 113/154 (73%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 1591 ATTGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTATTTGCA 1650 |||||| || || ||||| ||||| || ||||||||||| | ||||| | ||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1651 ATTTGATTGCCAGTCCCTTTG---GGCCCCAATCAATTCTTTCCAGTGCTTCATCTTTAG 1707 || | ||||||| || || ||||||||| | || |||| |||||| || || Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1708 GTAGTGC-GGTGCGACGTCATCAATGACGTTATA 1740 | ||| || | ||||||||| ||||||||||| Sbjct 70501 AGA-TGCTGGAGGGACGTCATCTATGACGTTATA 70469 >seq5493 Length=32325 Score = 77.0 bits (84), Expect = 5e-11 Identities = 112/156 (72%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 1585 GCCTGGATTGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTA 1644 || ||||||||| | ||| || | | || || | |||||||||||| || || ||||| Sbjct 31563 GCATGGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTA 31504 Query 1645 TTTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTCATCTT 1704 || |||||||||||||| ||| | || || | |||||||| ||||| | | Sbjct 31503 CTTCACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCA--GCTTC-TTTG 31447 Query 1705 TAGGTAGTGCGGTGCGACGTCATCAATGACGTTATA 1740 || || ||||| ||||||||||||| ||| || Sbjct 31446 CAGATATGTCGGTGATACGTCATCAATGATGTTGTA 31411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8423980351150