Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_021719.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq3439 123 4e-25 seq3283 122 2e-24 seq54129 105 1e-19 seq5745 102 1e-18 seq490 102 1e-18 seq1993 93.3 7e-16 seq20728 87.8 3e-14 seq22495 80.6 5e-12 >seq3439 Length=62978 Score = 123 bits (136), Expect = 4e-25 Identities = 202/286 (71%), Gaps = 14/286 (5%) Strand=Plus/Minus Query 1706 GATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTAC 1765 ||||||| || | |||| | ||||| || ||||||||||||||||| |||||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1766 AGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------TTAGGT 1819 ||||| ||||| | ||| || || | ||| | | | | |||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1820 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATAC-TTTTGGA 1878 | | || ||| ||||| |||||||||||||| ||| || || ||| ||||||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT--TGAGTACGTTTTGGA 779 Query 1879 CTT-AAGTC--TAAATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCCCAGACT 1935 || || || ||||| || | || || ||||| ||||| || | |||||| || Sbjct 778 ATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCT 721 Query 1936 GTTTTACCTATTCTACTTGGGCCTTCTATTACAATACTAATGGGCC 1981 ||||| |||||||| ||||||||| || | ||| || ||||||| Sbjct 720 GTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 675 >seq3283 Length=49157 Score = 122 bits (134), Expect = 2e-24 Identities = 207/292 (71%), Gaps = 16/292 (5%) Strand=Plus/Minus Query 1701 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1760 ||| |||||||| || | |||| | ||||| || ||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1761 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1813 ||| || |||| ||||| | ||| || || | ||| | | | | |||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1814 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATAC-T 1872 ||| || | || |||||| || |||||||||||||| ||| || || ||| | Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACGT 2105 Query 1873 TTTGGACTT-AAGTC--TAAATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCC 1929 |||||| || || || ||||| || | || || ||||| ||||| || | |||| Sbjct 2104 TTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1930 CAGACTGTTTTACCTATTCTACTTGGGCCTTCTATTACAATACTAATGGGCC 1981 || ||||||| |||||||| ||||||||| || | ||| || ||||||| Sbjct 2046 CATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq54129 Length=2260 Score = 105 bits (116), Expect = 1e-19 Identities = 202/291 (69%), Gaps = 14/291 (5%) Strand=Plus/Minus Query 1701 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1760 ||| |||||||| || | |||| | ||||| || ||||||||||||| ||| |||||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1761 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1813 ||| || |||| || |||| | ||| || || | ||| | | | |||| Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1814 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACTT 1873 ||| || | || ||| || || |||||||||||||| || || |||| || Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTAT-GTT 2081 Query 1874 TTGGACTT--AAGTC-TAAATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCCC 1930 ||||| || || || ||||| || | || || ||| | | ||| || | ||||| Sbjct 2080 TTGGAATTAAAATTCATAAAT--CCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCC 2023 Query 1931 AGACTGTTTTACCTATTCTACTTGGGCCTTCTATTACAATACTAATGGGCC 1981 | ||||||| |||||||| ||||||||| || | ||| || ||||||| Sbjct 2022 ATGCTGTTTTTCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1972 >seq5745 Length=45059 Score = 102 bits (112), Expect = 1e-18 Identities = 182/259 (70%), Gaps = 14/259 (5%) Strand=Plus/Plus Query 1702 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA- 1760 || |||||||| | | |||| ||||| |||||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1761 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCT--TAAAGTGCTTTAGG 1818 ||| || || || ||||| | || || || ||||| | | ||| || |||| Sbjct 43601 TTTGCA-TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1819 TA------TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACT 1872 || ||| || || ||||||||||||||||||||| || ||| ||| | Sbjct 43660 TAAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1873 TTTGGACTTAAGTCTA-AATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCCCA 1931 || | | | || || | || | ||| | |||||||||||| || || || | ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 Query 1932 GACTGTTTTACCTATTCTA 1950 ||||||||||| |||||| Sbjct 43777 AACTGTTTTACCGATTCTA 43795 >seq490 Length=137872 Score = 102 bits (112), Expect = 1e-18 Identities = 201/292 (69%), Gaps = 14/292 (5%) Strand=Plus/Minus Query 1707 ATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTACA 1766 |||||| |||| || | || ||||||||||||||||| | |||||| | ||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1767 GTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTT--------AGG 1818 | | ||||||| | || |||||| || | ||| | | ||||| || Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1819 TATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTG-TTGCTGTATACTTTTGG 1877 | ||| || ||||||||| |||||||||||||| | ||| ||| || ||| Sbjct 70498 TGCTGGAGG--GACGTCATCTATGACGTTATACCATG-ACTCATTGGAAAATGTCTTTCT 70442 Query 1878 ACTTAAGTCTA-AATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCCCAGACTG 1936 | | || || | || | ||| | || ||||||||||| || ||| ||||||||| | | Sbjct 70441 ATTGAAATCCATAACGCCCATAAAG-TAATTATGTGGACCCAAACTTCTAGCCCATTCAG 70383 Query 1937 TTTTACCTATTCTACTTGGGCCTTCTATTACAATACTAATGGGCCTATCTGG 1988 | || || | |||| ||| |||||||| | | | |||||||||||||| Sbjct 70382 TCTTCCCAAGTCTAGATGGACCTTCTATAATTAAAGACATGGGCCTATCTGG 70331 >seq1993 Length=81530 Score = 93.3 bits (102), Expect = 7e-16 Identities = 194/282 (69%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 1699 TCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCG 1758 || || |||||||| || | |||| ||||| || |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1759 TA-TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTT-- 1815 || ||| || ||| | ||||| | || || | | ||| | | | | || ||| Sbjct 74346 TACTTTGCATTTG-ACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1816 ----AGGTAT--TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAT 1869 | || ||| || |||||||||||||||||||||||| || |||| ||| Sbjct 74287 AATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTTGTTCGATTAT 74230 Query 1870 ACTTTTGGACTTAAGTCTA-AATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGC 1928 ||| | | | || || | || | ||| | |||||||||||| || || || | | Sbjct 74229 GTTTTCGAATTCAAATCCATAAAGCCCATT-ATATAATTATGTGGACCCAACGAACGTGT 74171 Query 1929 CCAGACTGTTTTACCTATTCTACTTGGGCCTTCTATTACAAT 1970 ||| ||||||||||| |||||| || ||||| || | ||| Sbjct 74170 CCAAACTGTTTTACCGATTCTAGAAGGTCCTTCAATAATAAT 74129 >seq20728 Length=3653 Score = 87.8 bits (96), Expect = 3e-14 Identities = 185/266 (70%), Gaps = 15/266 (6%) Strand=Plus/Plus Query 1726 GGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA-TTTACAGTTGGATTGCCAGTCCTT 1784 ||||| || ||||||||||||| ||| |||||||| ||| || |||| |||| || Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCA-TTGGCCTGCC-GTTGCG 1499 Query 1785 CTGGGCCCCCATGAATTCCTTAAAGTGCT------TTAGGTATTGGGGGTTGACGTCATC 1838 ||| || || | ||| | | | | |||| ||| || | || ||||||||| Sbjct 1500 CTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1839 AATGACGTTATACCAAGCACTGTTGCTGTATAC-TTTTGGACTT-AAGTCTAAATGACCA 1896 ||||||||||| || ||| || || ||| |||| || || || |||| | | | Sbjct 1560 GATGACGTTATATCATGCATCATT--TGAGTACGTTTTCGAATTAAAATCTATA-AATCT 1616 Query 1897 CA-CAGATAATTATGTGGTCCTAAAGATCTAGCCCAGACTGTTTTACCTATTCTACTTGG 1955 || | || || ||||| |||| || | |||||| ||||||| |||||||| ||| Sbjct 1617 CATTATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGG 1676 Query 1956 GCCTTCTATTACAATACTAATGGGCC 1981 |||||| || | ||| || |||| || Sbjct 1677 GCCTTCAATAATAATGCTCATGGCCC 1702 >seq22495 Length=567 Score = 80.6 bits (88), Expect = 5e-12 Identities = 135/191 (71%), Gaps = 11/191 (6%) Strand=Plus/Minus Query 1701 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1760 ||| |||||||| || | |||| | |||| || | ||||||||||||||| |||||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1761 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1813 ||| || |||| ||||||| ||| || || | ||| | | | | |||| Sbjct 308 CTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1814 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATAC-T 1872 ||| || | || || |||||| |||||||||||||| ||| || || ||| | Sbjct 249 TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT--TGAGTACGT 192 Query 1873 TTTGGACTTAA 1883 |||||| |||| Sbjct 191 TTTGGAATTAA 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8730643708725