Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_022005.1 Length=2597 Score E Sequences producing significant alignments: (Bits) Value seq1010 113 7e-22 seq1993 111 3e-21 seq33 107 3e-20 seq5745 105 1e-19 seq3283 105 1e-19 seq3439 102 1e-18 seq77518 98.7 2e-17 seq54129 95.1 2e-16 seq22495 84.2 4e-13 >seq1010 Length=204159 Score = 113 bits (124), Expect = 7e-22 Identities = 193/276 (70%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 1543 GATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACAACTGGCTTGCCGTACTTGC 1602 ||||||| |||||||| || |||| | |||||||| | |||||| || |||||||| Sbjct 40914 GATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTACTTAG 40855 Query 1603 AATTTGACTGCCATTTCTTTTGGGCCCAAAAAAGTTCTTTCCAGTGCTTTAGCTTT-AGA 1661 |||||| ||||| || | ||| ||| || || |||||||| || ||| || | | Sbjct 40854 CATTTGATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTTTTTTTGCAAA 40795 Query 1662 TAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTCCGAGTACACTCTGGAA 1721 ||| | | || ||||| || || |||||| | | | ||| | | | ||| Sbjct 40794 TAGGATAGAGACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGATTTTGAA 40735 Query 1722 TTGAAGTCTAGGT-GTCCACTAAGATAATTATGTGGGCCTAATGATCGAGCCCACATCGT 1780 || || |||| | | ||| || | || |||||||||||||| ||||| |||| || || Sbjct 40734 TTAAAATCTATGAAGCCCATTATG-TAGTTATGTGGGCCTAAAGATCGTTCCCATATTGT 40676 Query 1781 CTTTCCTGTTCTTGAATCACCTTCGACTATGAGACT 1816 |||||| |||| | |||||| | |||| |||| Sbjct 40675 CTTTCCAATTCTAGTTGGACCTTCTAATATGTGACT 40640 >seq1993 Length=81530 Score = 111 bits (122), Expect = 3e-21 Identities = 186/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 1536 TCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACAACTGGCTTGCCG 1595 || |||||||||||||||||||| |||| ||||| ||||||| |||||| |||||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1596 TACTTGCAATTTGACTGCCATTTCTTTTGGGCCCAAAAAAGTTCTTTCCAGTGCTTTAGC 1655 ||||| |||||||||||| || ||| || || | | | || | || ||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTA 74287 Query 1656 TTTAGATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTCCGAGTACACT 1715 ||| ||| || | ||| |||||||||||||||||| | | | || ||| || | Sbjct 74286 ATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTT 74227 Query 1716 CTGGAATTGAAGTCTAGGTGTCCACTAAGATAATTATGTGGGCCTAATGATCGAGCCCAC 1775 | ||||| || || | || | | |||||||||||| || || || || | ||| Sbjct 74226 TTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCAA 74167 Query 1776 ATCGTCTTTCCTGTTCTTGAATCACCTTC 1804 | || || || |||| ||| ||||| Sbjct 74166 ACTGTTTTACCGATTCTAGAAGGTCCTTC 74138 >seq33 Length=454124 Score = 107 bits (118), Expect = 3e-20 Identities = 174/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 1539 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACAACTGGCTTGCCGTAC 1598 |||||||||||||||||||| |||| ||||| | |||||| |||||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1599 TTGCAATTTGACTGCCATTTCTTTTGGGCCCAAAAAAGTTCTTTCCAGTGCTTTAGCTTT 1658 || |||||||||||| || || | | | | | || | || ||| || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1659 AGATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTCCGAGTACACTCTG 1718 | ||| || | ||| |||||||||||||||||| | | |||| |||||| ||| Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1719 GAATTGAAGTCTA-GGTGTCCACTAAGATAATTATGTGGGCCTAATGATCGAGCCCACAT 1777 ||||| || || | | ||| || | ||||||||||| || || || || ||||| | Sbjct 403122 GAATTCAAATCCATAAAGCCCATTATG-TAATTATGTGGACCCAACGAACGTGCCCAAAC 403064 Query 1778 CGTCTTTC 1785 || |||| Sbjct 403063 TGTTTTTC 403056 >seq5745 Length=45059 Score = 105 bits (116), Expect = 1e-19 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 1539 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACAACTGGCTTGCCGTAC 1598 ||||||||||||| |||||| |||| ||||| |||||||| |||||| ||||||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1599 TTGCAATTTGACTGCCATTTCTTTTGGGCCCAAAAAAGTTCTTTCCAGTGCTTTAGCTTT 1658 || |||||||||||| || ||| || | | | | || | || ||| || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1659 AGATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTCCGAGTACACTCTG 1718 | ||| || | || |||||||||||||||||| | |||| ||| || | | Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1719 GAATTGAAGTCTAGGTGTCCACTAAGATAATTATGTGGGCCTAATGATCGAGCCCACATC 1778 ||||| || || | || | | |||||||||||| || || || || ||||| | Sbjct 43721 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACT 43780 Query 1779 GTCTTTCCTGTTCTTGAA 1796 || || || |||| ||| Sbjct 43781 GTTTTACCGATTCTAGAA 43798 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 181/259 (70%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 1539 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACAACTGGCTTGCCGTAC 1598 |||||||||||||| ||||| ||| ||||| |||||||| |||||| || |||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1599 TTGCAATTTGACTGCC-ATTTC-TTTTGGGCCCAAAAAAGTTCTTTCCAGTGCTTTAGCT 1656 || ||| | ||||| ||||| | || ||| | || | || | ||||| Sbjct 2220 TTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAA--CTGTTGATAATGCTTCTTAA 2163 Query 1657 TTAGATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTCCGAGTACACTC 1716 ||| ||| | ||| | ||| || || |||||||||||| | || | |||||| | Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 2103 Query 1717 TGGAATTGAAGTCTAGGTGTCCACTAAGATAATTATGTGGGCCTAATGATCGAGCCCACA 1776 ||||||| || || | ||| | | || || |||||||||||||| |||||||| Sbjct 2102 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 2043 Query 1777 TCGTCTTTCCTGTTCTTGA 1795 || || ||| ||||||| Sbjct 2042 CTGTTTTCCCTATTCTTGA 2024 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 180/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 1539 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACAACTGGCTTGCCGTAC 1598 ||| |||||||||| ||||| ||| ||||| |||||||| |||||| || |||||| Sbjct 960 CCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTAC 901 Query 1599 TTGCAATTTGACTGCCA-TTTCTTT-TGGGCCCAAAAAAGTTCTTTCCAGTGCTTTAGCT 1656 || || | ||||| |||| | || ||| | || | || | ||||| Sbjct 900 TTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAAC--TGTTGATAATGCTTCTTAA 843 Query 1657 TTAGATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTCCGAGTACACTC 1716 ||| ||| | ||| | ||||||||| |||||||||||| | || | |||||| | Sbjct 842 TTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTT 783 Query 1717 TGGAATTGAAGTCTAGGTGTCCACTAAGATAATTATGTGGGCCTAATGATCGAGCCCACA 1776 ||||||| || || | ||| | | || || |||||||||||||| |||||||| Sbjct 782 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 723 Query 1777 TCGTCTTTCCTGTTCTTGA 1795 || || ||| ||||||| Sbjct 722 CTGTTTTCCCTATTCTTGA 704 >seq77518 Length=14724 Score = 98.7 bits (108), Expect = 2e-17 Identities = 174/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 1539 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACAACTGGCTTGCCGTAC 1598 |||||||||||||| ||||| |||| ||||| |||||||| ||||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1599 TTGCAATTTGACTGCCATTTCTTTTGGGCCCAAAAAAGTTCTTTCCAGTGCTTTAGCTTT 1658 || ||||||||| || || ||| || | | | | || | |||||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1659 AGATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTCCGAGTACACTCTG 1718 | ||| || | |||||||||||||||||||||| | | |||| |||||| | | Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTC 2221 Query 1719 GAATTGAAGTCTAGGTGTCCACTAAGATAATTATGTGGGCCTAATGATCGAGCCCACATC 1778 |||| || || | || | | |||||||||||| || || | || ||||| | Sbjct 2220 AAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAAACT 2161 Query 1779 GTCTTTCCTGTTCT 1792 || || || |||| Sbjct 2160 GTTTTACCGATTCT 2147 >seq54129 Length=2260 Score = 95.1 bits (104), Expect = 2e-16 Identities = 175/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 1539 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACAACTGGCTTGCCGTAC 1598 |||||||||||||| ||||| ||| ||||| |||||||| || ||| || |||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1599 TTGCAATTTGACTGCCATTTCTTTTGGGCCCAAAAAAGTTCTTTCCAGTGCTTTAGCTTT 1658 || ||| | ||| || || | || || | | | | || | ||||| || Sbjct 2197 TTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAATT 2138 Query 1659 AGATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTCCGAGTACACTCTG 1718 | ||| | ||| | |||||| || |||||||||||| || || | ||||| | || Sbjct 2137 AAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTTTG 2078 Query 1719 GAATTGAAGTCTAGGTGTCCACTAAGATAATTATGTGGGCCTAATGATCGAGCCCACATC 1778 ||||| || | | ||| | | || || ||| ||| |||||| |||||||| Sbjct 2077 GAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCATGCT 2018 Query 1779 GTCTTTCCTGTTCTTGA 1795 || |||||| ||||||| Sbjct 2017 GTTTTTCCTATTCTTGA 2001 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 1539 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACAACTGGCTTGCCGTAC 1598 |||||||||||||| ||||| | | ||||| | |||||| |||||| || |||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1599 TTGCAATTTGACTGCCATTTCTTTTGGGCCCAAAAAAGTTCTTTCCAGTGCTTTAGCTTT 1658 || ||| | |||||| || || || | | | | || || ||||| || Sbjct 307 TTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATT 248 Query 1659 AGATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTCCGAGTACACTCTG 1718 | ||| | ||| | || ||||| |||||||||||| | || | |||||| | || Sbjct 247 AAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTG 188 Query 1719 GAATTGAAGTCTAGGTGTCCACTAAGATAATTATGTGGGCCTAATGATCGA 1769 ||||| || || | ||| | | || || |||||||||||||| ||| Sbjct 187 GAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8193799483870