Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_022229.1 Length=2775 Score E Sequences producing significant alignments: (Bits) Value seq3283 109 1e-20 seq22495 100 5e-18 seq3439 100 5e-18 seq3059 91.5 3e-15 seq33 91.5 3e-15 seq54129 89.7 9e-15 seq815 86.0 1e-13 seq953 84.2 4e-13 seq77518 82.4 1e-12 seq5745 82.4 1e-12 seq30129 78.8 2e-11 seq1993 77.0 6e-11 >seq3283 Length=49157 Score = 109 bits (120), Expect = 1e-20 Identities = 179/256 (70%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 1671 TTTATATGAT-GATGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAA 1729 |||||| ||| ||| || || |||||||| || | |||| | ||||| |||||||||| Sbjct 2299 TTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAA 2241 Query 1730 TTTGAATGGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATT 1789 |||||| || ||||||||||||| |||| ||||| | | ||| || || | ||| | Sbjct 2240 TTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT 2181 Query 1790 CTTTAAAATGCT------TTAAATAATGCGGGTCTACGTCATCAATGACATTGTACCAGG 1843 || | |||||| ||||||||| ||| ||||| || ||||| || ||||| | Sbjct 2180 GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATG 2121 Query 1844 CGTCGTTACTGTACACTTTAGGACTCAGGTCTAGATGTCCACACAAATAATTGTGTGGGC 1903 | || || |||| ||| | | | | || | | ||| | || |||||||||| Sbjct 2120 CATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGC 2061 Query 1904 CTAGAGACCTGGCCCA 1919 ||| || | ||||| Sbjct 2060 CTAATGAACGAGCCCA 2045 >seq22495 Length=567 Score = 100 bits (110), Expect = 5e-18 Identities = 167/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 1671 TTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1730 |||||| ||| | || || |||||||| || | |||| | |||| |||| |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1731 TTGAATGGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTC 1790 ||||| || || |||||||||| |||| ||||||| | ||| || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1791 TTTAAAATGCT------TTAAATAATGCGGGTCTACGTCATCAATGACATTGTACCAGGC 1844 || | |||||| ||||||||| ||| | |||||| ||||| || ||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1845 GTCGTTACTGTACACTTTAGGACTCAGGTCTAGATGTCCACACAAATAATTGTGTGGGCC 1904 || || |||| ||| | | | | || | | ||| | || ||||||||||| Sbjct 206 ATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCC 147 Query 1905 TA 1906 || Sbjct 146 TA 145 >seq3439 Length=62978 Score = 100 bits (110), Expect = 5e-18 Identities = 175/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 1671 TTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1730 |||||| ||| || || || ||||||| || | |||| | ||||| ||||||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1731 TTGAATGGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTC 1790 ||||| || || |||||||||| ||| ||||| | | ||| || || | ||| | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1791 TTTAAAATGCT------TTAAATAATGCGGGTCTACGTCATCAATGACATTGTACCAGGC 1844 || | |||||| ||||||||| ||| || ||||| ||||| || ||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1845 GTCGTTACTGTACACTTTAGGACTCAGGTCTAGATGTCCACACAAATAATTGTGTGGGCC 1904 || || |||| ||| | | | | || | | ||| | || ||||||||||| Sbjct 799 ATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCC 740 Query 1905 TAGAGACCTGGCCCA 1919 || || | ||||| Sbjct 739 TAATGAACGAGCCCA 725 >seq3059 Length=182465 Score = 91.5 bits (100), Expect = 3e-15 Identities = 110/150 (73%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 1687 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCG 1746 || || |||||||| || | |||| | ||||| ||||||||||||||||| || || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1747 TACTTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAATGCT----- 1801 || |||| |||| | ||||| | ||| || || | ||| | || | |||||| Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 20300 Query 1802 -TTAAATAATGCGGGTCTACGTCATCAATG 1830 ||||||||| ||| ||||| |||||| Sbjct 20299 ATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq33 Length=454124 Score = 91.5 bits (100), Expect = 3e-15 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1690 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTAC 1749 || |||||||| || | |||| ||||| |||| ||||||||||| || || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1750 TTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAATGCT------TT 1803 |||| ||| ||||||| | ||| | || | ||| | || | |||| | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1804 AAATAATGCGGGTCTACGTCATCAATGACATTGTACCAGGCGTCGTT 1850 |||||| || |||||||||||||| || ||||| |||||||| Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq54129 Length=2260 Score = 89.7 bits (98), Expect = 9e-15 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1687 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCG 1746 || || |||||||| || | |||| | ||||| ||||||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1747 TACTTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAATGCT----- 1801 ||||||| |||| || |||| ||| || || | ||| | || |||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1802 -TTAAATAATGCGGGTCTACGTCATCAATGACATTGTACCA 1841 ||||||||| ||| || || || ||||| || ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCA 2100 >seq815 Length=151552 Score = 86.0 bits (94), Expect = 1e-13 Identities = 131/186 (70%), Gaps = 7/186 (4%) Strand=Plus/Minus Query 1671 TTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1730 |||||| ||| || || || |||||||| || | ||| | ||||| ||||||||||| Sbjct 85439 TTTATAGGATAATCA-GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAAT 85381 Query 1731 TTGAATGGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTC 1790 |||| ||| || ||||||||| |||| | ||||| | ||| || || | ||| | Sbjct 85380 TTGACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTA 85321 Query 1791 TTTAAAATGCT------TTAAATAATGCGGGTCTACGTCATCAATGACATTGTACCAGGC 1844 || | ||| || ||||||||| | | ||||| || ||||| || ||||| || Sbjct 85320 TTGATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGC 85261 Query 1845 GTCGTT 1850 || || Sbjct 85260 ATCATT 85255 >seq953 Length=224861 Score = 84.2 bits (92), Expect = 4e-13 Identities = 130/186 (70%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 1671 TTTATATGATGATGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1730 |||||| ||| | || || |||||||| | | |||| | ||||| ||||||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1731 TTGAATGGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTC 1790 |||||| | || |||||||||| |||| ||||| | | ||| | || | ||| | Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1791 TTTAAAATGCT------TTAAATAATGCGGGTCTACGTCATCAATGACATTGTACCAGGC 1844 || | ||| || ||||||||| ||| ||||| || || || || ||||| || Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1845 GTCGTT 1850 || || Sbjct 2004 ATCATT 2009 >seq77518 Length=14724 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1690 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTAC 1749 || |||||||| || | |||| ||||| |||||||||||||||| | || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1750 TTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAATGCT------TT 1803 |||| ||| || |||| | || || || | ||| | || | |||||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1804 AAATAATGCGGGTCTACGTCATCAATGACATTGTACCAGGCGTCGTT 1850 |||||| || || ||||||||||| || ||||| |||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq5745 Length=45059 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1690 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTAC 1749 || |||||||| | | |||| ||||| || ||||||||||||| || || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1750 TTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAATGCT------TT 1803 |||| ||| ||||| | | || || || ||||| | || | |||| | || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1804 AAATAATGCGGGTCTACGTCATCAATGACATTGTACCAGGCGTCGTT 1850 |||||| || | |||||||||||| || ||||| |||||||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1687 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCG 1746 || || |||||||| || | |||| | ||||| |||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1747 TACTTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAATGCTT 1802 ||||||| |||| ||||| | | ||| || || | ||| | || | ||||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 >seq1993 Length=81530 Score = 77.0 bits (84), Expect = 6e-11 Identities = 117/167 (70%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1690 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTAC 1749 || |||||||| || | |||| ||||| ||| |||||||||||| || || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1750 TTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAATGCT------TT 1803 |||| ||| ||||| | | || || | | ||| | || | |||| | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1804 AAATAATGCGGGTCTACGTCATCAATGACATTGTACCAGGCGTCGTT 1850 |||||| || |||||||||||||| || ||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8759415511500