Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_022232.1 Length=2834 Score E Sequences producing significant alignments: (Bits) Value seq3283 118 2e-23 seq3439 109 1e-20 seq5745 87.8 3e-14 >seq3283 Length=49157 Score = 118 bits (130), Expect = 2e-23 Identities = 197/279 (71%), Gaps = 12/279 (4%) Strand=Plus/Minus Query 1756 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1815 ||| |||||||| || | |||| | ||||| || ||||||||||||||||| |||||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1816 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1868 ||| || |||| ||||| | ||| || || | ||| | | | | |||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1869 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAAACTT 1928 ||| || | || |||||| || |||||||||||||| ||| || ||| || Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 2103 Query 1929 TAGGGCTTAGATC--TAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCA 1986 | | | | ||| ||||| |||| | || ||||| ||||| || || | ||||| Sbjct 2102 TGGAATTAAAATCCATAAAT-CCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 Query 1987 TACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAAT 2025 | ||||||| |||||||| |||||||||||||| ||| Sbjct 2044 TGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAAT 2006 >seq3439 Length=62978 Score = 109 bits (120), Expect = 1e-20 Identities = 190/273 (70%), Gaps = 10/273 (4%) Strand=Plus/Minus Query 1761 GATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTAC 1820 ||||||| || | |||| | ||||| || ||||||||||||||||| || ||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1821 AGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTT------TAGGT 1874 ||||| ||||| | ||| || || | ||| | | | | ||||| || | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1875 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAAACTTTAGGGC 1934 | | || ||| ||||| |||||||||||||| ||| || ||| ||| | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1935 TTAGATC--TAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTGT 1992 | | ||| ||||| |||| | || ||||| ||||| || || | |||||| |||| Sbjct 776 TAAAATCCATAAAT-CCCATT-ATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGT 719 Query 1993 TTTGCCTATTCTGCTTGGGCCTTCAATAACAAT 2025 ||| |||||||| |||||||||||||| ||| Sbjct 718 TTTCCCTATTCTTGATGGGCCTTCAATAATAAT 686 >seq5745 Length=45059 Score = 87.8 bits (96), Expect = 3e-14 Identities = 191/279 (68%), Gaps = 14/279 (5%) Strand=Plus/Plus Query 1757 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA- 1815 || |||||||| | | |||| ||||| |||||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1816 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCT--TAAAGTGCTTTAGG 1873 ||| || || || ||||| | || || || ||||| | | ||| || |||| Sbjct 43601 TTTGCA-TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1874 TA------TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAAACT 1927 || ||| || || ||||||||||||||||||||| || ||| || | Sbjct 43660 TAAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1928 TTAGGGCTTAGATCTA-AATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCA 1986 || | | | ||| | || ||||| | |||||| || || ||||| || | ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 Query 1987 TACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAAT 2025 |||||||| || ||||| || | | |||||| ||| Sbjct 43777 AACTGTTTTACCGATTCTAGAAGGTCTTGCAATAATAAT 43815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8948030663025