Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_022586.1 Length=2786 Score E Sequences producing significant alignments: (Bits) Value seq3283 132 8e-28 seq3439 131 3e-27 seq5745 120 5e-24 seq33 118 2e-23 seq1993 113 8e-22 seq54129 96.9 6e-17 seq490 89.7 9e-15 seq80468 86.0 1e-13 seq35612 86.0 1e-13 seq22495 84.2 4e-13 seq20728 82.4 1e-12 seq30129 77.0 6e-11 seq5493 77.0 6e-11 >seq3283 Length=49157 Score = 132 bits (146), Expect = 8e-28 Identities = 203/287 (71%), Gaps = 8/287 (3%) Strand=Plus/Minus Query 1718 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1777 || ||||||||||| | |||| | ||||| || ||||||||||||||||| ||||||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1778 TTTGTGTTGGATTGCCAGTCCTTCTGGGCCCCAATGAATTCCTTAAAGTGCT------TT 1831 |||| |||| ||||| | ||| || || | ||| | | | | |||| || Sbjct 2220 TTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 2161 Query 1832 AGGTATTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTATTACTGTACACTCTT 1891 | || | || |||||| || |||||||| ||||| ||| ||| |||| | | Sbjct 2160 AAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTTG 2101 Query 1892 GGATTCAGGTCCA-AGTGCCCACATAGATAATTATGTGGACCTAAAGACCGAGCCCAAAC 1950 | ||| | |||| | |||| || || || ||||| ||||| || |||||||| | Sbjct 2100 GAATTAAAATCCATAAATCCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 2042 Query 1951 TGTTTTACCTATCCTACTTGGCCCTTCTATTACAATACTAATGGGCC 1997 |||||| ||||| || ||| ||||| || | ||| || ||||||| Sbjct 2041 TGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq3439 Length=62978 Score = 131 bits (144), Expect = 3e-27 Identities = 200/283 (71%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 1722 GATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTTG 1781 |||||||||| | |||| | ||||| || ||||||||||||||||| || |||||||||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1782 TGTTGGATTGCCAGTCCTTCTGGGCCCCAATGAATTCCTTAAAGTGCT------TTAGGT 1835 ||||| ||||| | ||| || || | ||| | | | | |||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1836 ATTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTATTACTGTACACTCTTGGAT 1895 | | || ||| ||||| |||||||| ||||| ||| ||| |||| | | | || Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1896 TCAGGTCCA-AGTGCCCACATAGATAATTATGTGGACCTAAAGACCGAGCCCAAACTGTT 1954 | | |||| | |||| || || || ||||| ||||| || |||||||| ||||| Sbjct 776 TAAAATCCATAAATCCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTT 718 Query 1955 TTACCTATCCTACTTGGCCCTTCTATTACAATACTAATGGGCC 1997 || ||||| || ||| ||||| || | ||| || ||||||| Sbjct 717 TTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 675 >seq5745 Length=45059 Score = 120 bits (132), Expect = 5e-24 Identities = 184/258 (71%), Gaps = 12/258 (5%) Strand=Plus/Plus Query 1718 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1777 || |||||||||| | |||| ||||| |||||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1778 TTTGTGTTGGATTGCCAGTCCTTCTGGGCCCCAATGAATTCCT--TAAAGTGCTTTAGGT 1835 |||| || || ||||| | || || || ||||| | | ||| || |||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1836 A------TTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTATTACTGTACACTC 1889 | ||| || || ||||||||||||||| ||||| || || || | Sbjct 43661 AAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTT 43718 Query 1890 TTGGATTCAGGTCCA-AGTGCCCACATAGATAATTATGTGGACCTAAAGACCGAGCCCAA 1948 | | ||||| |||| | ||||| || ||||||||||||||| || || || |||||| Sbjct 43719 TCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCAA 43777 Query 1949 ACTGTTTTACCTATCCTA 1966 ||||||||||| || ||| Sbjct 43778 ACTGTTTTACCGATTCTA 43795 >seq33 Length=454124 Score = 118 bits (130), Expect = 2e-23 Identities = 203/289 (70%), Gaps = 13/289 (4%) Strand=Plus/Minus Query 1718 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1777 || ||||||||||| | |||| ||||| || | ||||||||||||||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1778 TTTGTGTTGGATTGCCAGTCCTTCTGGGCCCCAATGAATTCCTTAAAGTGCTTT------ 1831 |||| || || ||||||| ||| | || | ||| | | | | || ||| Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1832 AGGTAT--TGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTATTACTGTACACTC 1889 | || ||| || |||||||||||||||||| ||||| || || ||| || Sbjct 403182 AAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTC 403125 Query 1890 TTGGATTCAGGTCCA-AGTGCCCACATAGATAATTATGTGGACCTAAAGACCGAGCCCAA 1948 | | ||||| |||| | ||||| || |||||||||||||| || || || |||||| Sbjct 403124 TCGAATTCAAATCCATAAAGCCCAT-TATGTAATTATGTGGACCCAACGAACGTGCCCAA 403066 Query 1949 ACTGTTTTACCTATCCTACTTGGCCCTTCTATTACAATACTAATGGGCC 1997 |||||||| | || ||| || ||||| || | ||| || |||||| Sbjct 403065 ACTGTTTT-TCAATTCTAGAAGGTCCTTCAATAATAATGCTTTTGGGCC 403018 >seq1993 Length=81530 Score = 113 bits (124), Expect = 8e-22 Identities = 196/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 1715 TCGCCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCG 1774 || || ||||||||||| | |||| ||||| || |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1775 TACTTTGTGTTGGATTGCCAGTCCTTCTGGGCCCCAATGAATTCCTTAAAGTGCTTT--- 1831 ||||||| || || ||||| | || || | | ||| | | | | || ||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTA 74287 Query 1832 ---AGGTAT--TGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTATTACTGTACA 1886 | || ||| || |||||||||||||||||| ||||| || | || || Sbjct 74286 ATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATG 74229 Query 1887 CTCTTGGATTCAGGTCCA-AGTGCCCACATAGATAATTATGTGGACCTAAAGACCGAGCC 1945 | | | ||||| |||| | ||||| || ||||||||||||||| || || || | | Sbjct 74228 TTTTCGAATTCAAATCCATAAAGCCCAT-TATATAATTATGTGGACCCAACGAACGTGTC 74170 Query 1946 CAAACTGTTTTACCTATCCTACTTGGCCCTTCTATTACAAT 1986 |||||||||||||| || ||| || ||||| || | ||| Sbjct 74169 CAAACTGTTTTACCGATTCTAGAAGGTCCTTCAATAATAAT 74129 >seq54129 Length=2260 Score = 96.9 bits (106), Expect = 6e-17 Identities = 195/287 (68%), Gaps = 8/287 (3%) Strand=Plus/Minus Query 1718 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1777 || ||||||||||| | |||| | ||||| || ||||||||||||| ||| || |||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1778 TTTGTGTTGGATTGCCAGTCCTTCTGGGCCCCAATGAATTCCTTAAAGTGCT------TT 1831 |||| |||| || |||| | ||| || || | ||| | | | |||| || Sbjct 2197 TTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAATT 2138 Query 1832 AGGTATTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTATTACTGTACACTCTT 1891 | || | || ||| || || |||||||| ||||| || ||| ||| | | Sbjct 2137 AAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTTTG 2078 Query 1892 GGATTCAGGTCCA-AGTGCCCACATAGATAATTATGTGGACCTAAAGACCGAGCCCAAAC 1950 | ||| | | || | |||| || || || ||| | | ||| || |||||||| | Sbjct 2077 GAATTAAAATTCATAAATCCCA-TTATGTAGTTGTGTTGGCATAATGAACGAGCCCATGC 2019 Query 1951 TGTTTTACCTATCCTACTTGGCCCTTCTATTACAATACTAATGGGCC 1997 |||||| ||||| || ||| ||||| || | ||| || ||||||| Sbjct 2018 TGTTTTTCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1972 >seq490 Length=137872 Score = 89.7 bits (98), Expect = 9e-15 Identities = 202/296 (68%), Gaps = 22/296 (7%) Strand=Plus/Minus Query 1723 ATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTTGT 1782 |||||| |||| || | || ||||||||||||||||| | |||||| | || |||| Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1783 GTTGGATTGCCAGTCCTTCTGGGCCCCAATGAATTCCTTAAAGTGCTT--------TAGG 1834 | | ||||||| | || ||||||||| | ||| | | ||||| || Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1835 TATTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACT-ATT----ACTGTACACTC 1889 | ||| || ||||||||| |||||||| ||||| | ||| ||| | ||| || Sbjct 70498 TGCTGGAGG--GACGTCATCTATGACGTTATACCATG-ACTCATTGGAAAATGT---CT- 70446 Query 1890 TTGGATTCAGGTCCA-AGTGCCCACATAGATAATTATGTGGACCTAAAGACCGAGCCCAA 1948 || ||| | |||| | ||||| | || |||||||||||||| ||| | |||||| Sbjct 70445 TTCTATTGAAATCCATAACGCCCATAAAG-TAATTATGTGGACCCAAACTTCTAGCCCAT 70387 Query 1949 ACTGTTTTACCTATCCTACTTGGCCCTTCTATTACAATACTAATGGGCCTATCCGG 2004 | || || || | ||| ||| |||||||| | | | ||||||||||| || Sbjct 70386 TCAGTCTTCCCAAGTCTAGATGGACCTTCTATAATTAAAGACATGGGCCTATCTGG 70331 >seq80468 Length=4946 Score = 86.0 bits (94), Expect = 1e-13 Identities = 194/285 (68%), Gaps = 14/285 (5%) Strand=Plus/Plus Query 1722 GATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTTG 1781 |||||||||| | |||| | |||||||| |||||||| ||||| || || |||||||||| Sbjct 4273 GATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTG 4332 Query 1782 TGTTGGATTGCCAGTCCTTCTGGGCCCCAATGAATTCCTTAAAGTGCT--TTAGGTA--- 1836 | |||| | ||| | | ||| || || | ||| | | | | |||| ||| || Sbjct 4333 TATTGGCCTACCA-TTGTGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 4391 Query 1837 ---TTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTATTACTGTACACTCTTGG 1893 ||| || |||||| | |||||||| ||||| ||| || | |||| | | | Sbjct 4392 AATTTGAAGG--GACGTCGTTGATGACGTTATACCATGCA-TAATTGAGTACGTTTTGGA 4448 Query 1894 ATTCAGGTCCA-AGTGCCCACATAGATAATTATGTGGACCTAAAGACCGAGCCCAAACTG 1952 ||| | | || | |||| || || || |||| ||||| | |||| ||| ||| Sbjct 4449 ATTAAAATTCATAAATCCCA-TTATGTAGTTGTGTGAGCCTAATCAACGAGTCCATGCTG 4507 Query 1953 TTTTACCTATCCTACTTGGCCCTTCTATTACAATACTAATGGGCC 1997 |||| | ||| || ||| ||||| || | ||| || |||| || Sbjct 4508 TTTTCCATATTCTTGATGGGCCTTCAATAATAATGCTCATGGCCC 4552 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1718 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1777 || ||||||||||| | |||| | ||||| || ||||||||||||||||| || |||||| Sbjct 1510 CCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTAC 1569 Query 1778 TTTGTGTTGGATTGCCA 1794 |||| ||||| ||||| Sbjct 1570 TTTGCGTTGGCCTGCCA 1586 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 157/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 1718 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1777 || ||||||||||| | |||| | |||| || | ||||||||||||||| || |||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1778 TTTGTGTTGGATTGCCAGTCCTTCTGGGCCCCAATGAATTCCTTAAAGTGCT------TT 1831 |||| |||| ||||||| ||| || || | ||| | | | | |||| || Sbjct 307 TTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATT 248 Query 1832 AGGTATTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTATTACTGTACACTCTT 1891 | || | || || |||||| |||||||| ||||| ||| ||| |||| | | Sbjct 247 AAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTG 188 Query 1892 GGATTCAGGTCCAAGTGCCCACATAGATAATTATGTGGACCTAAAGACCGA 1942 | ||| | ||||| || || || || ||||| ||||| || ||| Sbjct 187 GAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 >seq20728 Length=3653 Score = 82.4 bits (90), Expect = 1e-12 Identities = 178/263 (68%), Gaps = 9/263 (3%) Strand=Plus/Plus Query 1742 GGAATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCTTC 1801 ||||| || ||||||||||||| ||| || |||||||||| |||| |||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1802 TGGGCCCCAATGAATTCCTTAAAGTGCT------TTAGGTATTGGGGGTCGACGTCATCA 1855 || || || | ||| | | | | |||| ||| || | || ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1856 ATGACGTTGTACCAAGCACTATTACTGTACACTCTTGGATTCAGGTCCA-AGTGCCCACA 1914 |||||||| || || ||| ||| |||| | | | ||| | || | | | || Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATAAATCTCA-T 1619 Query 1915 TAGATAATTATGTGGACCTAAAGACCGAGCCCAAACTGTTTTACCTATCCTACTTGGCCC 1974 || || || ||||| |||| || |||||||| ||||||| ||||| || ||| || Sbjct 1620 TATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGCC 1679 Query 1975 TTCTATTACAATACTAATGGGCC 1997 ||| || | ||| || |||| || Sbjct 1680 TTCAATAATAATGCTCATGGCCC 1702 >seq30129 Length=3650 Score = 77.0 bits (84), Expect = 6e-11 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1718 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1777 || ||||||||||| | |||| | ||||| || ||||||||||||||| | || |||||| Sbjct 2374 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCGTAC 2433 Query 1778 TTTGTGTTGGATTGCCA 1794 |||| |||| ||||| Sbjct 2434 TTTGCATTGGCCTGCCA 2450 >seq5493 Length=32325 Score = 77.0 bits (84), Expect = 6e-11 Identities = 118/166 (71%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 1717 GCCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1776 || ||||||||| | | ||| | ||||||| ||||||||||||||| || ||||| Sbjct 31563 GCATGGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTA 31504 Query 1777 CTTTGTGTTGGATTGCCAGTCCTTCTGGGCCCCAATGAATTCCTTAAAG-TGCTTT--AG 1833 ||| || |||||||||| | || | || || | || || || | |||| || Sbjct 31503 CTTCACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCAGCTTCTTTGCAG 31444 Query 1834 GTATTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTATTA 1879 ||| || ||||||||||||| ||||||||| |||| |||| Sbjct 31443 ATATGTCGGTGATACGTCATCAATGATGTTGTACCATGCACGATTA 31398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8794581048225