Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_022645.1 Length=2804 Score E Sequences producing significant alignments: (Bits) Value seq3283 93.3 7e-16 seq54129 80.6 5e-12 seq35612 78.8 2e-11 seq4104 77.0 6e-11 seq3059 77.0 6e-11 >seq3283 Length=49157 Score = 93.3 bits (102), Expect = 7e-16 Identities = 190/280 (68%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 1701 TCCAGAAACTCTTTATATGAT-GATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1759 |||| ||| |||||| ||| ||| ||||| |||||||| || | |||| | ||||| Sbjct 2310 TCCAAGAACGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1760 GCCGCCTTTAATTTGAATCGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTTTGGGC 1819 |||||||||||||||| || ||||||||||||| |||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1820 CCCCATAAATTCTTTGAAGTGCT------TGAGGTAGTGTGGGTCGACGTCATCAATGAC 1873 || | || | || | |||| | | || | || |||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1874 GTTGTACCAGGCGTCGTTGCTGTAGACCTTTGGACTAAGATCCAAATGTCCACACAAGTA 1933 ||| ||||| || || || ||| || | | ||| ||||| | ||| | ||| Sbjct 2131 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 2072 Query 1934 GTTGTGTGGTCCCAGAGATCGGGCCCACATCGTCTTCCCT 1973 ||||||||| || | || || ||||| || |||||| Sbjct 2071 GTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 2032 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 1728 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATCGGCTTCCCG 1787 ||||| |||||||| || | |||| | ||||| ||||||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1788 TACTTTGTATTG 1799 ||||||| |||| Sbjct 2200 TACTTTGCATTG 2189 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1712 TTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAAT 1771 |||||| ||| | ||||| |||||||| || | |||| | ||||||||||||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1772 TTGAATCGGCTTCCCGTACTTTGTATTGCTTTGCCA 1807 ||||| || || |||||||||| ||| ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1701 TCCAGAAACTCTTTATATGATGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATG 1760 |||| ||| |||||| ||| | ||||| |||||||| || | |||| | ||||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1761 CCGCCTTTAATTTGAATCGGCTTCCCGTACTTTGTAT 1797 |||||||||||||||| || || |||||||||| || Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq3059 Length=182465 Score = 77.0 bits (84), Expect = 6e-11 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 1728 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATCGGCTTCCCG 1787 ||||| |||||||| || | |||| | ||||| ||||||||||||||||| || || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1788 TACTTTGTATTG 1799 || |||| |||| Sbjct 20359 TAATTTGCATTG 20348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8852124653775