Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_023849.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq3283 86.0 1e-13 seq3439 84.2 4e-13 >seq3283 Length=49157 Score = 86.0 bits (94), Expect = 1e-13 Identities = 178/259 (69%), Gaps = 12/259 (5%) Strand=Plus/Minus Query 1692 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGTTTCCCA 1751 || || |||||||| || | |||| | ||||| || ||||||||||||| |||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1752 TATTTCGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTGA-AGTGCT---- 1806 || || | ||| ||||| | || ||| || || | || | |||| | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCTT 2165 Query 1807 --TTAGATAGTGGGGATCAACGTCATCAATGACGTTATACCAAGCATTATTGCTATATAC 1864 ||| ||| | ||| ||||| || |||||||||||||| |||| ||| | ||| Sbjct 2164 AATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTAC 2107 Query 1865 -TCTTGG-GCTGAGATCGAGATGCCCACATAAATAATTATGTGGCCCTAATGACCTAGCC 1922 | |||| | | ||| | | || || || || ||||| |||||||| | |||| Sbjct 2106 GTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1923 CACATTGTTTTACCTGTTC 1941 || |||||| ||| ||| Sbjct 2046 CATGCTGTTTTCCCTATTC 2028 >seq3439 Length=62978 Score = 84.2 bits (92), Expect = 4e-13 Identities = 187/275 (68%), Gaps = 12/275 (4%) Strand=Plus/Minus Query 1676 TTTATATGAGGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAAT 1735 |||||| || || || || ||||||| || | |||| | ||||| || |||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1736 TTGAATGGGTTTCCCATATTTCGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATAAATTC 1795 ||||| ||||| || || || | |||| ||||| | || ||| || || | || | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACT- 861 Query 1796 CTTGA-AGTGCT------TTAGATAGTGGGGATCAACGTCATCAATGACGTTATACCAAG 1848 |||| | |||| ||| ||| | ||| || ||||| |||||||||||||| | Sbjct 860 GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATG 801 Query 1849 CATTATTGCTATATAC-TCTTGG-GCTGAGATCGAGATGCCCACATAAATAATTATGTGG 1906 ||| ||| | ||| | |||| | | ||| | | || || || || ||||| Sbjct 800 CATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGG 743 Query 1907 CCCTAATGACCTAGCCCACATTGTTTTACCTGTTC 1941 |||||||| | |||||| |||||| ||| ||| Sbjct 742 GCCTAATGAACGAGCCCATGCTGTTTTCCCTATTC 708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8596616001610