Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_024009.1 Length=2772 Score E Sequences producing significant alignments: (Bits) Value seq5745 104 4e-19 seq3439 96.9 6e-17 seq3283 95.1 2e-16 seq22495 86.0 1e-13 seq35612 82.4 1e-12 seq77518 80.6 5e-12 seq4104 80.6 5e-12 >seq5745 Length=45059 Score = 104 bits (114), Expect = 4e-19 Identities = 188/271 (69%), Gaps = 13/271 (5%) Strand=Plus/Plus Query 1664 TCTAAGAACTCTTTATA-GCTGGAGTTGGGCCC--AGGATTGCATAGGAAGATAGTGGGA 1720 ||||||||| ||||||| | | | ||| ||| ||||||||| | | |||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1721 ATGCCCCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGG 1780 || || ||||||||||||||||| || |||||||| | || ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1781 GCCCCCATGAACTCTT--TAAAGTGCTTTAGGTA------GTGGGGGTCTACGTCATCAA 1832 || || ||||||| || ||| || |||| || ||| || | |||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAA 43685 Query 1833 TGACGTTGTACCAGGAGGCATTTGAATAGATTTTAGGGCTCAGATCTAAATGGCCACATA 1892 ||||||| ||||| | | | || || || |||| | ||| ||| | | ||| || Sbjct 43686 TGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTA 43745 Query 1893 AGTAATTATGTGGTCCCAAAGACCTGGCCCA 1923 ||||||||||| ||||| || | ||||| Sbjct 43746 TATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq3439 Length=62978 Score = 96.9 bits (106), Expect = 6e-17 Identities = 183/268 (68%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 1664 TCTAAGAACTCTTTATAGCTGGAGTTGGGCCCAGGATTGCATAGGAAGATAGTGGGAATG 1723 ||||||||| ||||||| | | || ||| ||||||| || | |||| | ||||| Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1724 CCCCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCC 1783 || ||||||||||||||||| || |||||||| | |||| ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1784 CCCATGAACTCTTTAAAGTGCT------TTAGGTAGTGGGGGTCTACGTCATCAATGACG 1837 || | ||||| || | | |||| ||| || | || || ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1838 TTGTACCAGGAGGCATTTGAATAGATTTTAGGGCTCAGATC--TAAATGGCCACATAAGT 1895 || ||||| | ||||||| || |||| | | | ||| ||||| || || || Sbjct 810 TTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAAT--CCCATTATGT 753 Query 1896 AATTATGTGGTCCCAAAGACCTGGCCCA 1923 | || ||||| || || || | ||||| Sbjct 752 AGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq3283 Length=49157 Score = 95.1 bits (104), Expect = 2e-16 Identities = 185/269 (69%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 1664 TCTAAGAACTCTTTATAGC-TGGAGTTGGGCCCAGGATTGCATAGGAAGATAGTGGGAAT 1722 || |||||| ||||||| | || | || ||||||||||| || | |||| | ||||| Sbjct 2310 TCCAAGAACGTTTTATAGGATTGA-TCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1723 GCCCCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGC 1782 || ||||||||||||||||| ||||||||||| | ||| ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1783 CCCCATGAACTCTTTAAAGTGCT------TTAGGTAGTGGGGGTCTACGTCATCAATGAC 1836 || | ||||| || | | |||| ||| || | || ||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1837 GTTGTACCAGGAGGCATTTGAATAGATTTTAGGGCTCAGATC--TAAATGGCCACATAAG 1894 ||| ||||| | ||||||| || |||| | | | ||| ||||| || || | Sbjct 2131 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAAT--CCCATTATG 2074 Query 1895 TAATTATGTGGTCCCAAAGACCTGGCCCA 1923 || || ||||| || || || | ||||| Sbjct 2073 TAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq22495 Length=567 Score = 86.0 bits (94), Expect = 1e-13 Identities = 173/257 (67%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 1664 TCTAAGAACTCTTTATAGCTGGAGTTGGGCCCAGGATTGCATAGGAAGATAGTGGGAATG 1723 |||||||| ||||||| | | || ||||||||||| || | |||| | |||| Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1724 CCCCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCC 1783 || | ||||||||||||||| || |||||||| | ||| ||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1784 CCCATGAACTCTTTAAAGTGCT------TTAGGTAGTGGGGGTCTACGTCATCAATGACG 1837 || | ||||| || | | |||| ||| || | || | |||||| |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1838 TTGTACCAGGAGGCATTTGAATAGATTTTAGGGCTCAGATCTAAATGGCCACATAAGTAA 1897 || ||||| | ||||||| || |||| | | | ||| ||| || || ||| Sbjct 217 TTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAG 158 Query 1898 TTATGTGGTCCCAAAGA 1914 || ||||| || || || Sbjct 157 TTGTGTGGGCCTAATGA 141 >seq35612 Length=1588 Score = 82.4 bits (90), Expect = 1e-12 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1691 GGCCCAGGATTGCATAGGAAGATAGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCCG 1750 || ||||||||||| || | |||| | |||||||| ||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1751 TACTTGGTGTTGCTTTGCCA 1770 ||||| | |||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq77518 Length=14724 Score = 80.6 bits (88), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 10/227 (4%) Strand=Plus/Minus Query 1693 CCCAGGATTGCATAGGAAGATAGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTA 1752 |||||||||||| || | |||| ||||| || |||||||||||||||| || |||| Sbjct 2401 CCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTA 2342 Query 1753 CTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTT----- 1807 ||| | || || |||| | ||| || || | ||||| || | | |||||| Sbjct 2341 CTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1808 --AGGTAG-TGGGGGTCTACGTCATCAATGACGTTGTACCAGGAGGCATTTGAATAGATT 1864 | || ||| || || |||||||||||||| ||||| | | | || || || || Sbjct 2281 TAAATAAGCTGGAGGG--ACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 2224 Query 1865 TTAGGGCTCAGATCTAAATGGCCACATAAGTAATTATGTGGTCCCAA 1911 || ||| ||| | | ||| || ||||||||||| ||||| Sbjct 2223 TTCAAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAA 2177 >seq4104 Length=64936 Score = 80.6 bits (88), Expect = 5e-12 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1664 TCTAAGAACTCTTTATAGCTGGAGTTGGGCCCAGGATTGCATAGGAAGATAGTGGGAATG 1723 || |||||| ||||||| | | ||| ||||||||||| || | |||| | ||||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1724 CCCCCTTTAATTTGAACTGGCTTCCCGTACTT 1755 || ||||||||||||||||| || |||||||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8749824910575