Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_024116.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq3283 122 2e-24 seq22495 114 2e-22 seq3439 113 8e-22 seq77518 100 5e-18 seq4104 100 5e-18 seq442 98.7 2e-17 seq33 98.7 2e-17 seq54129 96.9 6e-17 seq5745 96.9 6e-17 seq80468 91.5 3e-15 seq35612 91.5 3e-15 seq30129 91.5 3e-15 seq815 91.5 3e-15 seq1993 89.7 9e-15 seq953 87.8 3e-14 seq6801 86.0 1e-13 seq3059 86.0 1e-13 seq20728 84.2 4e-13 >seq3283 Length=49157 Score = 122 bits (134), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 10/200 (5%) Strand=Plus/Minus Query 1664 ATCCAAGAACTCTTTATA--ACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGA 1721 |||||||||| |||||| | || || ||||| |||||||| || | |||| | ||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTG--ATCAGGTCCAGGATTGCAAAGTACGATACTTGGA 2254 Query 1722 ATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGG 1781 || |||||||||||||||||||| || |||||||||| ||| | ||||| | | || Sbjct 2253 ATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGT 2194 Query 1782 GCCCCCATGAATTCCTTAAAGTGCT------TTAGGTAATGGGGATCTACGTCATCGATG 1835 || || | ||| | | | | |||| ||| |||| ||| ||||| |||||| Sbjct 2193 GCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATG 2134 Query 1836 ACGTTATACCAGGCATCATT 1855 ||||||||||| |||||||| Sbjct 2133 ACGTTATACCATGCATCATT 2114 >seq22495 Length=567 Score = 114 bits (126), Expect = 2e-22 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1664 ATCCAAGAACTCTTTATAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1723 ||| ||||| |||||| ||| ||||| |||||||| || | |||| | |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1724 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGC 1783 |||| ||||||||||||||| ||||||||||||| ||| | ||||||| | || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1784 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAATGGGGATCTACGTCATCGATGAC 1837 || | ||| | | | | |||| ||| |||| ||| | |||||||||||| Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1838 GTTATACCAGGCATCATT 1855 ||||||||| |||||||| Sbjct 218 GTTATACCATGCATCATT 201 >seq3439 Length=62978 Score = 113 bits (124), Expect = 8e-22 Identities = 147/201 (73%), Gaps = 12/201 (6%) Strand=Plus/Minus Query 1664 ATCCAAGAACTCTTTATAACTGGA--ATTG-GGTCCTGGATTGCAGAGGAAGATAGTGGG 1720 ||| |||||| |||||| ||| ||| ||||| ||||||| || | |||| | || Sbjct 991 ATCTAAGAACGTTTTATA---GGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGG 935 Query 1721 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTG 1780 ||| |||||||||||||||||||| ||||||||||||| || | ||||| | | || Sbjct 934 AATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTG 875 Query 1781 GGCCCCCATGAATTCCTTAAAGTGCT------TTAGGTAATGGGGATCTACGTCATCGAT 1834 || || | ||| | | | | |||| ||| |||| ||| || |||||||| Sbjct 874 TGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGAT 815 Query 1835 GACGTTATACCAGGCATCATT 1855 |||||||||||| |||||||| Sbjct 814 GACGTTATACCATGCATCATT 794 >seq77518 Length=14724 Score = 100 bits (110), Expect = 5e-18 Identities = 143/201 (71%), Gaps = 9/201 (4%) Strand=Plus/Minus Query 1664 ATCCAAGAACTCTTTATAACTGGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1720 ||||||||| |||||||| ||| || || |||||||| || | |||| || Sbjct 2434 ATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGG 2375 Query 1721 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTG 1780 ||| ||||||||||||||||||| ||| ||||||||| |||||| || |||| | ||| Sbjct 2374 AATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTG 2315 Query 1781 GGCCCCCATGAATTCCTTAAAGTGCT------TTAGGTAATGGGGATCTACGTCATCGAT 1834 || || | ||| | | | | |||| ||| ||| ||| || ||||| || Sbjct 2314 TGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAAT 2255 Query 1835 GACGTTATACCAGGCATCATT 1855 |||||||||||| || || || Sbjct 2254 GACGTTATACCACGCGTCGTT 2234 >seq4104 Length=64936 Score = 100 bits (110), Expect = 5e-18 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1664 ATCCAAGAACTCTTTATAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1723 |||||||||| |||||| ||| |||||| |||||||| || | |||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1724 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTAT 1761 |||||||||||||||||||| ||||||||||||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq442 Length=237535 Score = 98.7 bits (108), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 1664 ATCCAAGAACTCTTTATAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1723 ||||||||| |||||| |||| ||||| |||||||| || |||| | ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1724 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGC 1783 |||||||||||||||||| ||||||||||||| ||| | ||| ||| | ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1784 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAATGGGGATCTACGTCATCGATGAC 1837 || | ||| | | | | |||| ||| |||| | | ||||| ||||| || Sbjct 22870 GCCTACGAACTGTTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAAC 22928 Query 1838 GTTATACCAGGCATCATT 1855 |||||||| |||||||| Sbjct 22929 GTTATACC-TGCATCATT 22945 >seq33 Length=454124 Score = 98.7 bits (108), Expect = 2e-17 Identities = 142/200 (71%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 1664 ATCCAAGAACTCTTTATAACTGGAATTGGGTCCT--GGATTGCAGAGGAAGATAGTGGGA 1721 ||| |||||| |||||||| | | || || |||||||| || | |||| ||| Sbjct 403335 ATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGA 403276 Query 1722 ATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGG 1781 || |||| ||||||||||||||| ||||||||||||| |||||| ||||||| | || Sbjct 403275 ATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGT 403216 Query 1782 GCCCCCATGAATTCCTTAAAGTGCT------TTAGGTAATGGGGATCTACGTCATCGATG 1835 | || | ||| | | | | || | ||| ||| ||| |||||||| ||| Sbjct 403215 ACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATG 403156 Query 1836 ACGTTATACCAGGCATCATT 1855 ||||||||||| || || || Sbjct 403155 ACGTTATACCACGCGTCGTT 403136 >seq54129 Length=2260 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1692 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCG 1751 ||||| |||||||| || | |||| | ||||| |||||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1752 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1806 ||||||| ||| | || |||| || || || | ||| | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1807 -TTAGGTAATGGGGATCTACGTCATCGATGACGTTATACCAGGCATCATT 1855 ||| |||| ||| || || ||||||||||||||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq5745 Length=45059 Score = 96.9 bits (106), Expect = 6e-17 Identities = 146/205 (71%), Gaps = 17/205 (8%) Strand=Plus/Plus Query 1664 ATCCAAGAACTCTTTATAACTGGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1720 ||| |||||| |||||||| ||| || || |||||||| | | |||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1721 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTG 1780 ||| || ||||||||||||||||| || |||||||||| |||||| ||||| | | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1781 GGCCCCCATGAATTCCT--TAAAGTGCTTTAGGTAA------TG--GGGATCTACGTCAT 1830 || || ||||| | | ||| || |||| ||| || ||||| ||||| Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGAT----GTCAT 43682 Query 1831 CGATGACGTTATACCAGGCATCATT 1855 | |||||||||||||| || || || Sbjct 43683 CAATGACGTTATACCATGCGTCGTT 43707 >seq80468 Length=4946 Score = 91.5 bits (100), Expect = 3e-15 Identities = 141/200 (71%), Gaps = 11/200 (6%) Strand=Plus/Plus Query 1664 ATCCAAGAACTCTTTATAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1723 || |||||| |||||| ||| ||||| ||||||| || | |||| | ||||| Sbjct 4238 ATTCAAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 4297 Query 1724 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCA--GTCCCTTTGG 1781 |||||||||||| ||||| || ||||||||||||||||| | | ||| || | || Sbjct 4298 TCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATTGGCCTACCATTGTGC---TGT 4354 Query 1782 GCCCCCATGAATTCCTTAAAGTGCT------TTAGGTAATGGGGATCTACGTCATCGATG 1835 || || | ||| | | | | |||| ||| |||| | | ||||| | |||| Sbjct 4355 GCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTTGAAGGGACGTCGTTGATG 4414 Query 1836 ACGTTATACCAGGCATCATT 1855 ||||||||||| |||| ||| Sbjct 4415 ACGTTATACCATGCATAATT 4434 >seq35612 Length=1588 Score = 91.5 bits (100), Expect = 3e-15 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1664 ATCCAAGAACTCTTTATAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1723 ||||||||| |||||| ||| ||||| |||||||| || | |||| | ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1724 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCA 1771 |||||||||||||||||||| ||||||||||||| || | ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq30129 Length=3650 Score = 91.5 bits (100), Expect = 3e-15 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1664 ATCCAAGAACTCTTTATAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1723 |||||||||| ||| || ||| ||||| |||||||| || | |||| | ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1724 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCA 1771 |||||||||||||||||| | ||||||||||||| ||| | ||||| Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450 >seq815 Length=151552 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1692 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCG 1751 ||||| |||||||| || | ||| | ||||| ||||||||||||||| | || ||| || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1752 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1806 ||||||| ||| | | ||||| | || || || | ||| | | | | | || Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1807 -TTAGGTAATGGGGATCTACGTCATCGATGACGTTATACCAGGCATCATT 1855 ||| |||| || ||||| ||||||||||||||||| |||||||| Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATT 85255 >seq1993 Length=81530 Score = 89.7 bits (98), Expect = 9e-15 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1695 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTAC 1754 || |||||||| || | |||| ||||| ||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1755 TTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1808 |||| |||||| ||||| | | ||| || | | ||| | | | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1809 AGGTAATGGGGATCTACGTCATCGATGACGTTATACCAGGC 1849 | ||| ||| |||||||| |||||||||||||| || Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGC 74243 >seq953 Length=224861 Score = 87.8 bits (96), Expect = 3e-14 Identities = 138/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 1664 ATCCAAGAACTCTTTATAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1723 ||| ||||| |||||| ||| ||||| |||||||| | | |||| | ||||| Sbjct 1812 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAAT 1871 Query 1724 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGC 1783 |||||||||||||||| || ||||||||||||| ||| ||||| | | || | Sbjct 1872 CCCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTAC 1931 Query 1784 CCCCATGAATTCCTTAAAGTGCTTT------AGGTAATGGGGATCTACGTCATCGATGAC 1837 || | ||| | | | | | |||| | |||| ||| ||||| ||||| || Sbjct 1932 GCCTACGAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAAC 1991 Query 1838 GTTATACCAGGCATCATT 1855 ||||||||| |||||||| Sbjct 1992 GTTATACCATGCATCATT 2009 >seq6801 Length=49729 Score = 86.0 bits (94), Expect = 1e-13 Identities = 87/113 (77%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1664 ATCCAAGAACTCTTTATAACTGGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1720 |||||||||| ||||||| ||| || || ||| |||| || | |||| || Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119 Query 1721 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGT 1773 ||| |||||||||||||||||||| || |||||||||| |||||| ||| ||| Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 >seq3059 Length=182465 Score = 86.0 bits (94), Expect = 1e-13 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1664 ATCCAAGAACTCTTTATAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1723 |||||||||| ||||| ||| ||||| |||||||| || | |||| | ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1724 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGT 1773 |||||||||||||||| ||| |||||||| |||| ||| | | ||||| Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGT 20338 >seq20728 Length=3653 Score = 84.2 bits (92), Expect = 4e-13 Identities = 105/143 (73%), Gaps = 7/143 (5%) Strand=Plus/Plus Query 1719 GGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTT 1778 ||||| || ||||||||||||| ||| ||||||||||||| ||| | |||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1779 TGGGCCCCCATGAATTCCTTAAAGTGCT------TTAGGTAATGGGGATCTACGTCATCG 1832 || || || | ||| | | | | |||| ||| |||| ||| ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1833 ATGACGTTATACCAGGCATCATT 1855 ||||||||||| || |||||||| Sbjct 1561 ATGACGTTATATCATGCATCATT 1583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8692524696310