Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_024117.1 Length=2785 Score E Sequences producing significant alignments: (Bits) Value seq3439 114 2e-22 seq3283 113 8e-22 seq5745 102 1e-18 seq490 96.9 6e-17 seq77518 91.5 3e-15 seq20728 84.2 4e-13 >seq3439 Length=62978 Score = 114 bits (126), Expect = 2e-22 Identities = 200/286 (70%), Gaps = 14/286 (5%) Strand=Plus/Minus Query 1725 GATTGCAGAGGAAGATTGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTAC 1784 ||||||| || | ||| | ||||| || ||||||||||||||||| |||||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1785 AGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TTAGGT 1838 ||||| ||||| | | || || || | ||| | | | | |||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1839 ATTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTATAC-TTTTGGA 1897 | | || ||| ||||| |||||||| ||||| ||| || || ||| ||||||| Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT--TGAGTACGTTTTGGA 779 Query 1898 CTT-AAGTC--TAAATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCCCAGACT 1954 || || || ||||| || | || || ||||| ||||| || | |||||| || Sbjct 778 ATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCT 721 Query 1955 GTTTTACCTATTCTACTTGGGCCTTCTATTACAATACTAATGGGCC 2000 ||||| |||||||| ||||||||| || | ||| || ||||||| Sbjct 720 GTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 675 >seq3283 Length=49157 Score = 113 bits (124), Expect = 8e-22 Identities = 205/292 (70%), Gaps = 16/292 (5%) Strand=Plus/Minus Query 1720 TCCTGGATTGCAGAGGAAGATTGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1779 ||| |||||||| || | ||| | ||||| || ||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1780 -TTTACAGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------ 1832 ||| || |||| ||||| | | || || || | ||| | | | | |||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1833 TTAGGTATTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTATAC-T 1891 ||| || | || |||||| || |||||||| ||||| ||| || || ||| | Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT--TGAGTACGT 2105 Query 1892 TTTGGACTT-AAGTC--TAAATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCC 1948 |||||| || || || ||||| || | || || ||||| ||||| || | |||| Sbjct 2104 TTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCC 2047 Query 1949 CAGACTGTTTTACCTATTCTACTTGGGCCTTCTATTACAATACTAATGGGCC 2000 || ||||||| |||||||| ||||||||| || | ||| || ||||||| Sbjct 2046 CATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq5745 Length=45059 Score = 102 bits (112), Expect = 1e-18 Identities = 182/259 (70%), Gaps = 14/259 (5%) Strand=Plus/Plus Query 1721 CCTGGATTGCAGAGGAAGATTGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA- 1779 || |||||||| | | ||| ||||| |||||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1780 TTTACAGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCT--TAAAGTGCTTTAGG 1837 ||| || || || ||||| | | ||| || || ||||| | | ||| || |||| Sbjct 43601 TTTGCA-TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1838 TA------TTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTATACT 1891 || ||| || || ||||||||||||||| ||||| || ||| ||| | Sbjct 43660 TAAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1892 TTTGGACTTAAGTCTA-AATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCCCA 1950 || | | | || || | || | ||| | |||||||||||| || || || | ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 Query 1951 GACTGTTTTACCTATTCTA 1969 ||||||||||| |||||| Sbjct 43777 AACTGTTTTACCGATTCTA 43795 >seq490 Length=137872 Score = 96.9 bits (106), Expect = 6e-17 Identities = 220/323 (68%), Gaps = 25/323 (8%) Strand=Plus/Minus Query 1702 TTTAAATGAGGAGCC----CTCTCCTGGATTGCAGAGGAAGATTGTGGGAATTCCACCTT 1757 |||| | ||| |||| ||||| | |||||| |||| |||| || |||||||||| Sbjct 70645 TTTATAAGAGTAGCCTGTACTCTCATT-ATTGCATAGGACAATTGATGGTATTCCACCTT 70587 Query 1758 TAATTTGAACTGGCTTTCCGTATTTACAGTTGGATTGCCAGTCCCTTTG---GGCCCCCA 1814 ||||||| | |||||| | ||||| | | | ||||||| || || |||||| | Sbjct 70586 TAATTTGTATTGGCTTAGCATATTTTGAATCAGCTTGCCAG---CTATGCTTGGCCCCAA 70530 Query 1815 TGAATTCCTTAAAGTGCTTT--------AGGTATTGGGGGTCGACGTCATCAATGACGTT 1866 | | ||| | | ||||| || | ||| || ||||||||| |||||||| Sbjct 70529 TAAGCTCCCTCCAATGCTTCTTCCAGAGAGATGCTGGAGG--GACGTCATCTATGACGTT 70472 Query 1867 GTACCAAGCACTG-TTGCTGTATACTTTTGGACTTAAGTCTA-AATGACCACACAGATAA 1924 ||||| | ||| ||| || ||| | | || || | || | ||| | || ||| Sbjct 70471 ATACCATG-ACTCATTGGAAAATGTCTTTCTATTGAAATCCATAACGCCCATAAAG-TAA 70414 Query 1925 TTATGTGGTCCTAAAGATCTAGCCCAGACTGTTTTACCTATTCTACTTGGGCCTTCTATT 1984 |||||||| || ||| ||||||||| | || || || | |||| ||| |||||||| Sbjct 70413 TTATGTGGACCCAAACTTCTAGCCCATTCAGTCTTCCCAAGTCTAGATGGACCTTCTATA 70354 Query 1985 ACAATACTAATGGGCCTATCTGG 2007 | | | |||||||||||||| Sbjct 70353 ATTAAAGACATGGGCCTATCTGG 70331 >seq77518 Length=14724 Score = 91.5 bits (100), Expect = 3e-15 Identities = 192/279 (69%), Gaps = 17/279 (6%) Strand=Plus/Minus Query 1721 CCTGGATTGCAGAGGAAGATTGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA- 1779 || |||||||| || | ||| ||||| || |||||||||||||||| ||| |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1780 TTTACAGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGC--TTTAGG 1837 ||| || || || || |||| | ||| || || | ||| | | | | ||| |||| Sbjct 2340 TTTGCA-TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1838 TA------TTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTATACT 1891 || ||| || ||| |||||||||||||| ||||| || ||| |||| | Sbjct 2281 TAAATAAGCTGGAGG--GACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 2224 Query 1892 TTTGGACTTAAGTCTA-AATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCCCA 1950 || | | || || | || | ||| | |||||||||||| || || | | ||||| Sbjct 2223 TTCAAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCCA 2165 Query 1951 GACTGTTTTACCTATTCTACTTGGGCCTTCTATTACAAT 1989 ||||||||||| |||||| || ||||| || | ||| Sbjct 2164 AACTGTTTTACCGATTCTA---GGTCCTTCAATAATAAT 2129 >seq20728 Length=3653 Score = 84.2 bits (92), Expect = 4e-13 Identities = 184/266 (69%), Gaps = 15/266 (6%) Strand=Plus/Plus Query 1745 GGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA-TTTACAGTTGGATTGCCAGTCCCT 1803 ||||| || ||||||||||||| ||| |||||||| ||| || |||| |||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCA-TTGGCCTGCC-GTTGCG 1499 Query 1804 TTGGGCCCCCATGAATTCCTTAAAGTGCT------TTAGGTATTGGGGGTCGACGTCATC 1857 || || || | ||| | | | | |||| ||| || | || ||||||||| Sbjct 1500 CTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1858 AATGACGTTGTACCAAGCACTGTTGCTGTATAC-TTTTGGACTT-AAGTCTAAATGACCA 1915 |||||||| || || ||| || || ||| |||| || || || |||| | | | Sbjct 1560 GATGACGTTATATCATGCATCATT--TGAGTACGTTTTCGAATTAAAATCTATA-AATCT 1616 Query 1916 CA-CAGATAATTATGTGGTCCTAAAGATCTAGCCCAGACTGTTTTACCTATTCTACTTGG 1974 || | || || ||||| |||| || | |||||| ||||||| |||||||| ||| Sbjct 1617 CATTATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGG 1676 Query 1975 GCCTTCTATTACAATACTAATGGGCC 2000 |||||| || | ||| || |||| || Sbjct 1677 GCCTTCAATAATAATGCTCATGGCCC 1702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8791384181250