Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_024491.1 Length=2778 Score E Sequences producing significant alignments: (Bits) Value seq3439 111 3e-21 seq3283 109 1e-20 seq22495 102 1e-18 seq4104 100 5e-18 seq35612 91.5 3e-15 seq30129 87.8 3e-14 seq3059 87.8 3e-14 seq442 86.0 1e-13 seq54129 82.4 1e-12 seq77518 80.6 5e-12 seq27608 77.0 6e-11 seq5745 77.0 6e-11 >seq3439 Length=62978 Score = 111 bits (122), Expect = 3e-21 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1690 ATCCAAGAACTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTTGGAAT 1749 ||| |||||| ||||||| | | ||||| ||||||| || | |||| ||||||| Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1750 CCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGC 1809 ||||||||||||||||||||| |||||||| || | |||| ||||| | | || || Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1810 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGAC 1863 || | ||| | | | | |||| ||| || | ||| ||| ||||| ||||| Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1864 GTTGTACCAGGCATCATT 1881 ||| ||||| |||||||| Sbjct 811 GTTATACCATGCATCATT 794 >seq3283 Length=49157 Score = 109 bits (120), Expect = 1e-20 Identities = 145/199 (73%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 1690 ATCCAAGAACTCTTTATAGC-TGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTTGGAA 1748 |||||||||| ||||||| | || | ||||| |||||||| || | |||| |||||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGA-TCAGGTCCAGGATTGCAAAGTACGATACTTGGAA 2253 Query 1749 TCCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGG 1808 |||||||||||||||||||||| || ||||| || | ||| ||||| | | || | Sbjct 2252 TCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTG 2193 Query 1809 CCCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGA 1862 | || | ||| | | | | |||| ||| || | ||| |||||| || |||| Sbjct 2192 CGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGA 2133 Query 1863 CGTTGTACCAGGCATCATT 1881 |||| ||||| |||||||| Sbjct 2132 CGTTATACCATGCATCATT 2114 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1690 ATCCAAGAACTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTTGGAAT 1749 ||| ||||| ||||||| | | ||||| |||||||| || | |||| || |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1750 CCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGC 1809 ||||| ||||||||||||||| |||||||| || | ||| ||||||| | || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1810 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGAC 1863 || | ||| | | | | |||| ||| || | ||| || |||||| ||||| Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1864 GTTGTACCAGGCATCATT 1881 ||| ||||| |||||||| Sbjct 218 GTTATACCATGCATCATT 201 >seq4104 Length=64936 Score = 100 bits (110), Expect = 5e-18 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1690 ATCCAAGAACTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTTGGAAT 1749 |||||||||| ||||||| | | |||||| |||||||| || | |||| ||||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1750 CCCGCCTTTAATTTGAACTGGCTTTCCGTATTT 1782 ||||||||||||||||||||| |||||||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq35612 Length=1588 Score = 91.5 bits (100), Expect = 3e-15 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1690 ATCCAAGAACTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTTGGAAT 1749 ||||||||| ||||||| | | ||||| |||||||| || | |||| ||||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1750 CCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCA 1797 |||||||||||||||||||| |||||||| || | |||| ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq30129 Length=3650 Score = 87.8 bits (96), Expect = 3e-14 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1690 ATCCAAGAACTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTTGGAAT 1749 |||||||||| ||| ||| | | ||||| |||||||| || | |||| ||||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1750 CCCGCCTTTAATTTGAACTGGCTTTCCGTATTT 1782 ||||||||||||||||||| | |||||||| || Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTT 2435 >seq3059 Length=182465 Score = 87.8 bits (96), Expect = 3e-14 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1690 ATCCAAGAACTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTTGGAAT 1749 |||||||||| ||||| | | | ||||| |||||||| || | |||| ||||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1750 CCCGCCTTTAATTTGAACTGGCTTTCCGTATTT 1782 ||||||||||||||||| ||| |||||||| || Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATT 20355 >seq442 Length=237535 Score = 86.0 bits (94), Expect = 1e-13 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1690 ATCCAAGAACTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTTGGAAT 1749 ||||||||| ||||||| | || ||||| |||||||| || |||| ||||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1750 CCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGC 1809 | |||||||||||||||||| |||||||| || | ||| ||| ||| | ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1810 CCCCATGAATTCCTTAAAGTGCTTT 1834 || | ||| | | | | |||||| Sbjct 22870 GCCTACGAACTGTTAATAATGCTTT 22894 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1718 GGTCCTGGATTGCAGAGGAAGATAGTTGGAATCCCGCCTTTAATTTGAACTGGCTTTCCG 1777 ||||| |||||||| || | |||| |||||||||||||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1778 TATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1832 || || | ||| || |||| || || || | ||| | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1833 -TTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCATCATT 1881 ||| || | ||| ||| || || |||||||| ||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq77518 Length=14724 Score = 80.6 bits (88), Expect = 5e-12 Identities = 173/257 (67%), Gaps = 9/257 (4%) Strand=Plus/Minus Query 1690 ATCCAAGAACTCTTTATA-GCTGGAGTTGGGTCCT--GGATTGCAGAGGAAGATAGTTGG 1746 ||||||||| ||||||| | | | ||| || |||||||| || | |||| ||| Sbjct 2434 ATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGG 2375 Query 1747 AATCCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTG 1806 ||||||||||||||||||||||| ||| |||| || | || || |||| | ||| Sbjct 2374 AATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTG 2315 Query 1807 GGCCCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAAT 1860 || || | ||| | | | | |||| ||| || ||| ||| |||||||| Sbjct 2314 TGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAAT 2255 Query 1861 GACGTTGTACCAGGCATCATTACTGTAGATCTTTGGGCTTAAGTCCAGATGACCACACAG 1920 |||||| ||||| || || || ||| | || | || |||| | || | Sbjct 2254 GACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTAT 2195 Query 1921 ATAATTATGTGGACCCA 1937 ||||||||||||||||| Sbjct 2194 ATAATTATGTGGACCCA 2178 >seq27608 Length=1821 Score = 77.0 bits (84), Expect = 6e-11 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1690 ATCCAAGAACTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTTGGAAT 1749 |||||||||| ||||||| | | ||||| |||||||| || | |||| ||||||| Sbjct 1745 ATCCAAGAACGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1804 Query 1750 CCCGCCTTTAATTTGAA 1766 ||||||||||||||||| Sbjct 1805 CCCGCCTTTAATTTGAA 1821 >seq5745 Length=45059 Score = 77.0 bits (84), Expect = 6e-11 Identities = 180/270 (67%), Gaps = 9/270 (3%) Strand=Plus/Plus Query 1690 ATCCAAGAACTCTTTATA-GCTGGAGTTGGGTCCT--GGATTGCAGAGGAAGATAGTTGG 1746 ||| |||||| ||||||| | | | ||| || |||||||| | | |||| ||| Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1747 AATCCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTG 1806 |||||| ||||||||||||||||| || ||||| || | || ||||| | | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1807 GGCCCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAAT 1860 || || ||||| | | | | || | ||| || ||| || ||||||||| Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAAT 43686 Query 1861 GACGTTGTACCAGGCATCATTACTGTAGATCTTTGGGCTTAAGTCCAGATGACCACACAG 1920 |||||| ||||| || || || || | || | | || |||| | || | Sbjct 43687 GACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTAT 43746 Query 1921 ATAATTATGTGGACCCAGTGACCTAGCCCA 1950 ||||||||||||||||| || | ||||| Sbjct 43747 ATAATTATGTGGACCCAACGAACGTGCCCA 43776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8769006112425