Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_024687.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq3283 116 6e-23 seq3439 111 3e-21 seq22495 91.5 3e-15 seq4104 84.2 4e-13 seq35612 82.4 1e-12 seq20728 78.8 2e-11 >seq3283 Length=49157 Score = 116 bits (128), Expect = 6e-23 Identities = 226/332 (68%), Gaps = 10/332 (3%) Strand=Plus/Minus Query 1637 GAATGTTGCATTGTGTATAGCCCAAGACTTCAGTGCTGAGTTCTTTTCCTCATCGAGGAA 1696 |||| |||||| |||| || ||||| ||| ||| || ||| ||| | ||| Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 2303 Query 1697 CTCTTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAGATCGTGGGAATGCCCCCTTT 1756 | ||||||| || || ||||||||||| || | ||| | ||||| || ||||| Sbjct 2302 CGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 2243 Query 1757 AATTTGAACTGGCTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTCTGGGCCCCCATGAT 1816 |||||||||||| ||||||||||| | || ||||| | | ||| || || | || Sbjct 2242 AATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAA 2183 Query 1817 TTCTTTAAAGTGCT------TTAGGTAGTTGGGGTCTACGTCATCAATGACGTTGTACCA 1870 | || | | |||| ||| || || || ||||| || |||||||| ||||| Sbjct 2182 CTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCA 2123 Query 1871 TGCATCATTTGAATAGATCTTAGGGCTCAGATC--TAAATGGCCACATAGGTAATTATGT 1928 |||||||||||| || | || | | | ||| ||||| || || ||| || ||| Sbjct 2122 TGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGT 2065 Query 1929 GGACCCAGTGACCTAGCCCACATTGTTTTCCC 1960 || || | ||| | |||||| ||||||||| Sbjct 2064 GGGCCTAATGAACGAGCCCATGCTGTTTTCCC 2033 >seq3439 Length=62978 Score = 111 bits (122), Expect = 3e-21 Identities = 221/326 (68%), Gaps = 10/326 (3%) Strand=Plus/Minus Query 1643 TGCATTGTGTATAGCCCAAGACTTCAGTGCTGAGTTCTTTTCCTCATCGAGGAACTCTTT 1702 |||||| |||| || ||||| ||| ||| || ||| ||| | |||| ||| Sbjct 1036 TGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAACGTTTT 977 Query 1703 ATAGCTGGAATTGGGCCCAGGATTGCATAGGAAGATCGTGGGAATGCCCCCTTTAATTTG 1762 |||| | | || ||| ||||||| || | ||| | ||||| || ||||||||||| Sbjct 976 ATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTG 917 Query 1763 AACTGGCTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTCTGGGCCCCCATGATTTCTTT 1822 |||||| || |||||||| | ||| ||||| | | ||| || || | || | || Sbjct 916 AACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTG 857 Query 1823 AAAGTGCT------TTAGGTAGTTGGGGTCTACGTCATCAATGACGTTGTACCATGCATC 1876 | | |||| ||| || || || || ||||| |||||||| ||||||||||| Sbjct 856 ATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATC 797 Query 1877 ATTTGAATAGATCTTAGGGCTCAGATC--TAAATGGCCACATAGGTAATTATGTGGACCC 1934 |||||| || | || | | | ||| ||||| || || ||| || ||||| || Sbjct 796 ATTTGAGTACGTTTTGGAATTAAAATCCATAAAT--CCCATTATGTAGTTGTGTGGGCCT 739 Query 1935 AGTGACCTAGCCCACATTGTTTTCCC 1960 | ||| | |||||| ||||||||| Sbjct 738 AATGAACGAGCCCATGCTGTTTTCCC 713 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 173/255 (68%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 1637 GAATGTTGCATTGTGTATAGCCCAAGACTTCAGTGCTGAGTTCTTTTCCTCATCGAGGAA 1696 |||| | |||| |||| || ||||| ||| ||| || ||| ||| | ||| Sbjct 449 GAATTCTACATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAA 390 Query 1697 CTCTTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAGATCGTGGGAATGCCCCCTTT 1756 ||||||| ||| || ||||||||||| || | ||| | |||| || | ||| Sbjct 389 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTT 330 Query 1757 AATTTGAACTGGCTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTCTGGGCCCCCATGAT 1816 |||||||||||| || |||||||| | || ||||||| | ||| || || | || Sbjct 329 AATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAA 270 Query 1817 TTCTTTAAAGTGCT------TTAGGTAGTTGGGGTCTACGTCATCAATGACGTTGTACCA 1870 | || | | |||| ||| || || || | |||||| |||||||| ||||| Sbjct 269 CTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCA 210 Query 1871 TGCATCATTTGAATA 1885 |||||||||||| || Sbjct 209 TGCATCATTTGAGTA 195 >seq4104 Length=64936 Score = 84.2 bits (92), Expect = 4e-13 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1637 GAATGTTGCATTGTGTATAGCCCAAGACTTCAGTGCTGAGTTCTTTTCCTCATCGAGGAA 1696 |||| |||||| |||| || ||||| ||| ||| || ||| ||| | ||| Sbjct 20909 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 20850 Query 1697 CTCTTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAGATCGTGGGAATGCCCCCTTT 1756 | ||||||| ||| ||| ||||||||||| || | ||| | ||||| || ||||| Sbjct 20849 CGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 20790 Query 1757 AATTTGAACTGGCTTCCCGTACTT 1780 |||||||||||| || |||||||| Sbjct 20789 AATTTGAACTGGTTTTCCGTACTT 20766 >seq35612 Length=1588 Score = 82.4 bits (90), Expect = 1e-12 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 1637 GAATGTTGCATTGTGTATAGCCCAAGACTTCAGTGCTGAGTTCTTTTCCTCATCGAGGAA 1696 |||| |||||| |||| || ||||| ||| ||| || ||| ||| | ||| Sbjct 1428 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 1487 Query 1697 CTCTTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAGATCGTGGGAATGCCCCCTTT 1756 ||||||| ||| || ||||||||||| || | ||| | |||||||| ||||| Sbjct 1488 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTT 1547 Query 1757 AATTTGAACTGGCTTCCCGTACTTGGTGTT 1786 |||||||||||| || |||||||| | ||| Sbjct 1548 AATTTGAACTGGTTTTCCGTACTTTGCGTT 1577 >seq20728 Length=3653 Score = 78.8 bits (86), Expect = 2e-11 Identities = 156/227 (69%), Gaps = 13/227 (6%) Strand=Plus/Plus Query 1743 GGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTACTTTGCCAGTCCCTC 1802 ||||| |||||||||||||||| ||| || |||||||| | || |||| || | | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1803 TGGGCCCCCATGATTTCTTTAAAGTGCT------TTAGGTAGTTGGGGTCTACGTCATCA 1856 || || || | || | || | | |||| ||| || || || |||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1857 ATGACGTTGTACCATGCATCATTTGAATAGATCTTAGGGCTCAGATC--TAAATGGCCAC 1914 |||||||| || |||||||||||||| || | || | | | ||| ||||| | | Sbjct 1561 ATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATAAAT---CTC 1617 Query 1915 A-TAGGTAATTATGTGGACCCAGTGACCTAGCCCACATTGTTTTCCC 1960 | || ||| || ||||| | | ||| | |||||| ||||||||| Sbjct 1618 ATTATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCC 1664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8654161218430