Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_024693.1 Length=2831 Score E Sequences producing significant alignments: (Bits) Value seq3283 150 3e-33 seq3439 149 1e-32 seq5745 127 4e-26 seq33 127 4e-26 seq1993 122 2e-24 seq77518 114 2e-22 seq80468 98.7 2e-17 seq22495 91.5 3e-15 seq30129 87.8 3e-14 seq35612 86.0 1e-13 seq3059 78.8 2e-11 >seq3283 Length=49157 Score = 150 bits (166), Expect = 3e-33 Identities = 207/287 (72%), Gaps = 8/287 (3%) Strand=Plus/Minus Query 1755 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1814 || ||||||||||| | |||| | ||||| || ||||||||||||||||| ||||||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1815 TTTGTGTTGGATTGCCAGTCTCTCTGGGCCCCAATGAATTCTTTAAAGTGCT------TT 1868 |||| |||| ||||| | || ||| || || | ||| | || | | |||| || Sbjct 2220 TTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 2161 Query 1869 AGGTATTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTACACTCTT 1928 | || | || |||||| || |||||||| ||||| ||| || |||| | | Sbjct 2160 AAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTTG 2101 Query 1929 GGACTCAGGTCCA-AGTGCCCACACAGATAATTATGTGGGCCTAAAGACCGAGCCCAAAC 1987 | | | | |||| | |||| | || || ||||||||||| || |||||||| | Sbjct 2100 GAATTAAAATCCATAAATCCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGC 2042 Query 1988 TGTTTTACCTATTCTGCTTGGCCCTTCAATAACAATACTAATGGGCC 2034 |||||| |||||||| ||| |||||||||| ||| || ||||||| Sbjct 2041 TGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq3439 Length=62978 Score = 149 bits (164), Expect = 1e-32 Identities = 204/283 (72%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 1759 GATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTTG 1818 |||||||||| | |||| | ||||| || ||||||||||||||||| || |||||||||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1819 TGTTGGATTGCCAGTCTCTCTGGGCCCCAATGAATTCTTTAAAGTGCT------TTAGGT 1872 ||||| ||||| | || ||| || || | ||| | || | | |||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1873 ATTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTACACTCTTGGAC 1932 | | || ||| ||||| |||||||| ||||| ||| || |||| | | | | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1933 TCAGGTCCA-AGTGCCCACACAGATAATTATGTGGGCCTAAAGACCGAGCCCAAACTGTT 1991 | | |||| | |||| | || || ||||||||||| || |||||||| ||||| Sbjct 776 TAAAATCCATAAATCCCA-TTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTT 718 Query 1992 TTACCTATTCTGCTTGGCCCTTCAATAACAATACTAATGGGCC 2034 || |||||||| ||| |||||||||| ||| || ||||||| Sbjct 717 TTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 675 >seq5745 Length=45059 Score = 127 bits (140), Expect = 4e-26 Identities = 204/289 (71%), Gaps = 12/289 (4%) Strand=Plus/Plus Query 1755 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1814 || |||||||||| | |||| ||||| |||||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1815 TTTGTGTTGGATTGCCAGTCTCTCTGGGCCCCAATGAATTCTT--TAAAGTGCTTTAGGT 1872 |||| || || ||||| | | || || || ||||| | || ||| || |||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1873 A------TTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTACACTC 1926 | ||| || || ||||||||||||||| ||||| || ||| || | Sbjct 43661 AAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTT 43718 Query 1927 TTGGACTCAGGTCCA-AGTGCCCACACAGATAATTATGTGGGCCTAAAGACCGAGCCCAA 1985 | | | ||| |||| | ||||| | |||||||||||| || || || || |||||| Sbjct 43719 TCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCAA 43777 Query 1986 ACTGTTTTACCTATTCTGCTTGGCCCTTCAATAACAATACTAATGGGCC 2034 ||||||||||| ||||| || | | |||||| ||| || ||| || Sbjct 43778 ACTGTTTTACCGATTCTAGAAGGTCTTGCAATAATAATGCTTTTGGACC 43826 >seq33 Length=454124 Score = 127 bits (140), Expect = 4e-26 Identities = 205/289 (71%), Gaps = 13/289 (4%) Strand=Plus/Minus Query 1755 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1814 || ||||||||||| | |||| ||||| || | ||||||||||||||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1815 TTTGTGTTGGATTGCCAGTCTCTCTGGGCCCCAATGAATTCTT--TAAAGTGCTTTAGGT 1872 |||| || || ||||||| | ||| | || | ||| | || ||| | |||| | Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1873 A------TTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTACACTC 1926 | ||| || |||||||||||||||||| ||||| || ||| ||| || Sbjct 403182 AAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTC 403125 Query 1927 TTGGACTCAGGTCCA-AGTGCCCACACAGATAATTATGTGGGCCTAAAGACCGAGCCCAA 1985 | | | ||| |||| | ||||| | ||||||||||| || || || || |||||| Sbjct 403124 TCGAATTCAAATCCATAAAGCCCA-TTATGTAATTATGTGGACCCAACGAACGTGCCCAA 403066 Query 1986 ACTGTTTTACCTATTCTGCTTGGCCCTTCAATAACAATACTAATGGGCC 2034 |||||||| | ||||| || |||||||||| ||| || |||||| Sbjct 403065 ACTGTTTT-TCAATTCTAGAAGGTCCTTCAATAATAATGCTTTTGGGCC 403018 >seq1993 Length=81530 Score = 122 bits (134), Expect = 2e-24 Identities = 198/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 1752 TCGCCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCG 1811 || || ||||||||||| | |||| ||||| || |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1812 TACTTTGTGTTGGATTGCCAGTCTCTCTGGGCCCCAATGAATTCTTTAAAGTGCTTT--- 1868 ||||||| || || ||||| | | || || | | ||| | || | | || ||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTA 74287 Query 1869 ---AGGTAT--TGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTACA 1923 | || ||| || |||||||||||||||||| ||||| || |||| || Sbjct 74286 ATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATG 74229 Query 1924 CTCTTGGACTCAGGTCCA-AGTGCCCACACAGATAATTATGTGGGCCTAAAGACCGAGCC 1982 | | | | ||| |||| | ||||| | |||||||||||| || || || || | | Sbjct 74228 TTTTCGAATTCAAATCCATAAAGCCCATT-ATATAATTATGTGGACCCAACGAACGTGTC 74170 Query 1983 CAAACTGTTTTACCTATTCTGCTTGGCCCTTCAATAACAAT 2023 |||||||||||||| ||||| || |||||||||| ||| Sbjct 74169 CAAACTGTTTTACCGATTCTAGAAGGTCCTTCAATAATAAT 74129 >seq77518 Length=14724 Score = 114 bits (126), Expect = 2e-22 Identities = 195/278 (70%), Gaps = 15/278 (5%) Strand=Plus/Minus Query 1755 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1814 || ||||||||||| | |||| ||||| || |||||||||||||||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1815 TTTGTGTTGGATTGCCAGTCTCTCTGGGCCCCAATGAATTCTTTAAAGTGC--TTTAGGT 1872 |||| || || || |||| | || || || | ||| | || | | ||| |||| | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1873 A------TTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTACACTC 1926 | ||| || ||| |||||||||||||| ||||| || ||| ||| | Sbjct 2280 AAATAAGCTGGAGG--GACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTT 2223 Query 1927 TTGGACTCAGGTCCA-AGTGCCCACACAGATAATTATGTGGGCCTAAAGACCGAGCCCAA 1985 | | ||| |||| | ||||| | |||||||||||| || || | || |||||| Sbjct 2222 TCAAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCCAA 2164 Query 1986 ACTGTTTTACCTATTCTGCTTGGCCCTTCAATAACAAT 2023 ||||||||||| ||| || || |||||||||| ||| Sbjct 2163 ACTGTTTTACCGATT---CTAGGTCCTTCAATAATAAT 2129 >seq80468 Length=4946 Score = 98.7 bits (108), Expect = 2e-17 Identities = 197/285 (69%), Gaps = 14/285 (5%) Strand=Plus/Plus Query 1759 GATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTTG 1818 |||||||||| | |||| | |||||||| |||||||| ||||| || || |||||||||| Sbjct 4273 GATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTG 4332 Query 1819 TGTTGGATTGCCAGTCTCTCTGGGCCCCAATGAATTCTTTAAAGTGCT--TTAGGTA--- 1873 | |||| | ||| | | ||| || || | ||| | || | | |||| ||| || Sbjct 4333 TATTGGCCTACCATTGT-GCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 4391 Query 1874 ---TTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTACACTCTTGG 1930 ||| || |||||| | |||||||| ||||| ||| ||| |||| | | | Sbjct 4392 AATTTGAAGG--GACGTCGTTGATGACGTTATACCATGCATAATTG-AGTACGTTTTGGA 4448 Query 1931 ACTCAGGTCCA-AGTGCCCACACAGATAATTATGTGGGCCTAAAGACCGAGCCCAAACTG 1989 | | | | || | |||| | || || |||| |||||| | |||| ||| ||| Sbjct 4449 ATTAAAATTCATAAATCCCA-TTATGTAGTTGTGTGAGCCTAATCAACGAGTCCATGCTG 4507 Query 1990 TTTTACCTATTCTGCTTGGCCCTTCAATAACAATACTAATGGGCC 2034 |||| | |||||| ||| |||||||||| ||| || |||| || Sbjct 4508 TTTTCCATATTCTTGATGGGCCTTCAATAATAATGCTCATGGCCC 4552 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 1755 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1814 || ||||||||||| | |||| | |||| || | ||||||||||||||| || |||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1815 TTTGTGTTGGATTGCCAGTCTCTCTGGGCCCCAATGAATTCTTTAAAGTGCT------TT 1868 |||| |||| ||||||| | ||| || || | ||| | || | | |||| || Sbjct 307 TTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATT 248 Query 1869 AGGTATTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCA 1910 | || | || || |||||| |||||||| ||||| ||| Sbjct 247 AAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCA 206 >seq30129 Length=3650 Score = 87.8 bits (96), Expect = 3e-14 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1755 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1814 || ||||||||||| | |||| | ||||| || ||||||||||||||| | || |||||| Sbjct 2374 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCGTAC 2433 Query 1815 TTTGTGTTGGATTGCCAGTCTCTCTGGGCCCCAATGAATTCTTTAAAGTGCTT 1867 |||| |||| ||||| | || ||| || || | ||| | || | | ||||| Sbjct 2434 TTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1755 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1814 || ||||||||||| | |||| | ||||| || ||||||||||||||||| || |||||| Sbjct 1510 CCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTAC 1569 Query 1815 TTTGTGTTGGATTGCCA 1831 |||| ||||| ||||| Sbjct 1570 TTTGCGTTGGCCTGCCA 1586 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 85/113 (75%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1755 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1814 || ||||||||||| | |||| | ||||| || ||||||||||||| ||| || ||||| Sbjct 20416 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAA 20357 Query 1815 TTTGTGTTGGATTGCCAGTCTCTCTGGGCCCCAATGAATTCTTTAAAGTGCTT 1867 |||| |||| | ||||| | ||| || || | ||| | || | | ||||| Sbjct 20356 TTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTT 20304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8938440062100