Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_024810.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq3283 98.7 2e-17 seq22495 78.8 2e-11 >seq3283 Length=49157 Score = 98.7 bits (108), Expect = 2e-17 Identities = 184/269 (68%), Gaps = 10/269 (4%) Strand=Plus/Minus Query 1634 ATCCAAGAATTCTTTATAGC--TGCTCGAAGGACCAGGATTGCAGAGGAAGATAGTGGGT 1691 ||||||||| ||||||| || || ||| ||||||||||| || | |||| | || Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATC--AGGTCCAGGATTGCAAAGTACGATACTTGGA 2254 Query 1692 ATACCTCCTTTAATCATGACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCACGCTGG 1751 || || |||||||| ||||| || ||||| |||| ||| ||||| | ||||| Sbjct 2253 ATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGT 2194 Query 1752 GCCCCCATGAATTCTTTAAAGTGTTTC------AAGTAGTGCGGGTCGACGTCGTCAATG 1805 || || | ||| | || | | || ||| || || | ||| ||||||||| ||| Sbjct 2193 GCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATG 2134 Query 1806 ACGTTGTACCAAGCATCGTTACTGTAGATCTTGGGGCTCAGGTCCAGATGGCCGCACAAG 1865 ||||| ||||| ||||| || ||| | |||| | | |||| | || | | Sbjct 2133 ACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATG 2074 Query 1866 TAATTGTGCGGTCCTAAAGAACGTGCCCA 1894 || ||||| || ||||| ||||| ||||| Sbjct 2073 TAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 176/263 (67%), Gaps = 10/263 (4%) Strand=Plus/Minus Query 1634 ATCCAAGAATTCTTTATAGCTGCTCGA--AGGACCAGGATTGCAGAGGAAGATAGTGGGT 1691 ||| |||||| ||||||| | | | ||| ||||||||||| || | |||| | | Sbjct 398 ATCTAAGAATGTTTTATAG--GATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGA 341 Query 1692 ATACCTCCTTTAATCATGACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCACGCTGG 1751 || || | |||||| ||||| |||||||| |||| ||| ||||||| ||||| Sbjct 340 ATCCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGT 281 Query 1752 GCCCCCATGAATTCTTTAAAGTGTTTC------AAGTAGTGCGGGTCGACGTCGTCAATG 1805 || || | ||| | || | | || ||| || || | ||| || ||| || ||| Sbjct 280 GCGCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATG 221 Query 1806 ACGTTGTACCAAGCATCGTTACTGTAGATCTTGGGGCTCAGGTCCAGATGGCCGCACAAG 1865 ||||| ||||| ||||| || ||| | |||| | | |||| | || | | Sbjct 220 ACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATG 161 Query 1866 TAATTGTGCGGTCCTAAAGAACG 1888 || ||||| || ||||| ||||| Sbjct 160 TAGTTGTGTGGGCCTAATGAACG 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8679736870350