Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_024894.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq3439 89.7 9e-15 seq22495 77.0 6e-11 >seq3439 Length=62978 Score = 89.7 bits (98), Expect = 9e-15 Identities = 169/249 (68%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 1673 ATTGCACAGGAAGATAGTGGGAATTCCTCCTTTAATCATGACCGGCTTTCCGTACTTGGT 1732 |||||| || | |||| | ||||| || |||||||| || || ||||||||||| | Sbjct 955 ATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGC 896 Query 1733 ATTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGATA 1786 ||| ||||| | ||||| || || | ||| | || | | |||| ||| ||| Sbjct 895 GTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATA 836 Query 1787 GTGGGGATCAACGTCATCAATGACGTTGTACCAGGCATCATTGCTATACACCTTTGGGCT 1846 | ||| || ||||| |||||||| ||||| |||||||| ||| || | | Sbjct 835 ATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATT 776 Query 1847 CAAATCAAGATGTCCACACAAGTAATTGTGGGGTCCTAAACAACGAGCCCACATTGTTTT 1906 ||||| | | ||| | ||| ||||| || ||||| |||||||||| |||||| Sbjct 775 AAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTT 716 Query 1907 GCCCGTTCT 1915 || |||| Sbjct 715 CCCTATTCT 707 >seq22495 Length=567 Score = 77.0 bits (84), Expect = 6e-11 Identities = 114/162 (70%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 1673 ATTGCACAGGAAGATAGTGGGAATTCCTCCTTTAATCATGACCGGCTTTCCGTACTTGGT 1732 |||||| || | |||| | |||| || | |||||| || || ||||||||||| | Sbjct 362 ATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGC 303 Query 1733 ATTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGATA 1786 |||| ||||||| ||||| || || | ||| | || | | |||| ||| ||| Sbjct 302 ATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATTAAATA 243 Query 1787 GTGGGGATCAACGTCATCAATGACGTTGTACCAGGCATCATT 1828 | ||| | |||||| |||||||| ||||| |||||||| Sbjct 242 ATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8641373392470