Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_025681.1 Length=2782 Score E Sequences producing significant alignments: (Bits) Value seq3439 131 3e-27 seq3283 131 3e-27 seq5745 104 4e-19 seq1993 98.7 2e-17 seq22495 78.8 2e-11 >seq3439 Length=62978 Score = 131 bits (144), Expect = 3e-27 Identities = 198/282 (70%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 1708 GATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTAC 1767 ||||||| || | |||| | ||||| || ||||||||||||||||| |||||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1768 AGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGGT 1821 |||| ||||| | ||| || || | ||| | || | | |||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1822 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACTTTGGGAC 1881 | | || ||| ||||| |||||||||||||| ||| || ||| ||||| | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1882 TCAAGTCCAGGTGTCCACACAAATAATTATGAGGACCTAACGACCGAGCCCATACTGTTT 1941 | || |||| ||| | || || || || ||||| || ||||||||| |||||| Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTT 717 Query 1942 TTCCTATTCTACTTGGGCCTTCTATAACAATACTAATGGGCC 1983 | |||||||| ||||||||| |||| ||| || ||||||| Sbjct 716 TCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 675 >seq3283 Length=49157 Score = 131 bits (144), Expect = 3e-27 Identities = 203/288 (70%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 1703 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1762 ||| |||||||| || | |||| | ||||| || ||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1763 -TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCT------ 1815 ||| || ||| ||||| | ||| || || | ||| | || | | |||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1816 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACTT 1875 ||| || | || |||||| || |||||||||||||| ||| || ||| || Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 2103 Query 1876 TGGGACTCAAGTCCAGGTGTCCACACAAATAATTATGAGGACCTAACGACCGAGCCCATA 1935 ||| | | || |||| ||| | || || || || ||||| || ||||||||| Sbjct 2102 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 2043 Query 1936 CTGTTTTTCCTATTCTACTTGGGCCTTCTATAACAATACTAATGGGCC 1983 ||||||| |||||||| ||||||||| |||| ||| || ||||||| Sbjct 2042 CTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq5745 Length=45059 Score = 104 bits (114), Expect = 4e-19 Identities = 199/289 (69%), Gaps = 12/289 (4%) Strand=Plus/Plus Query 1704 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA- 1762 || |||||||| | | |||| ||||| |||||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1763 TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCTT--TAAAGTGCTTTAGG 1820 ||| || ||| ||||| | || || || ||||| | || ||| || |||| Sbjct 43601 TTTGCATTTG-ACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1821 TA------TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACT 1874 || ||| || || ||||||||||||||||||||| || ||| || | Sbjct 43660 TAAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1875 TTGGGACTCAAGTCCAGGTGTCCACACAAATAATTATGAGGACCTAACGACCGAGCCCAT 1934 || | | |||| |||| || | ||||||||| ||||| ||||| || ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAA 43777 Query 1935 ACTGTTTTTCCTATTCTACTTGGGCCTTCTATAACAATACTAATGGGCC 1983 |||||||| || |||||| || | | | |||| ||| || ||| || Sbjct 43778 ACTGTTTTACCGATTCTAGAAGGTCTTGCAATAATAATGCTTTTGGACC 43826 >seq1993 Length=81530 Score = 98.7 bits (108), Expect = 2e-17 Identities = 193/281 (69%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 1701 TCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCG 1760 || || |||||||| || | |||| ||||| || |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1761 TA-TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCTTT-- 1817 || ||| || ||| | | | | | | || || | | ||| | || | | || ||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGT-TGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1818 ----AGGTAT--TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATAC 1871 | || ||| || |||||||||||||||||||||||| || |||| || Sbjct 74287 AATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTTGTTCGATTAT 74230 Query 1872 ACTTTGGGACTCAAGTCCAGGTGTCCACACAAATAATTATGAGGACCTAACGACCGAGCC 1931 ||| | | |||| |||| || | ||||||||| ||||| ||||| || | | Sbjct 74229 GTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTC 74170 Query 1932 CATACTGTTTTTCCTATTCTACTTGGGCCTTCTATAACAAT 1972 || |||||||| || |||||| || ||||| |||| ||| Sbjct 74169 CAAACTGTTTTACCGATTCTAGAAGGTCCTTCAATAATAAT 74129 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 1703 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1762 ||| |||||||| || | |||| | |||| || | ||||||||||||||| |||||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1763 -TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCT------ 1815 ||| || ||| ||||||| ||| || || | ||| | || | | |||| Sbjct 308 CTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1816 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCA 1859 ||| || | || || |||||| |||||||||||||| ||| Sbjct 249 TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCA 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8781793580325