Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_025725.1 Length=2735 Score E Sequences producing significant alignments: (Bits) Value seq3439 89.7 9e-15 seq3283 84.2 4e-13 seq22495 78.8 2e-11 seq4104 77.0 6e-11 >seq3439 Length=62978 Score = 89.7 bits (98), Expect = 9e-15 Identities = 165/240 (69%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 1683 GGCCCAGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCG 1742 || ||| ||||||| || | |||| | || ||||| |||||||||||||| || |||||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1743 TATTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTGA-AGTGCT---- 1797 || || | |||| ||||| | | ||| || || | ||||| |||| | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCTT 845 Query 1798 --TTAGGTAGTGGGGATCTACGTCATCAATGACGTTGTACCACGCGTCGTTGCTGTAGAC 1855 ||| || | ||| || ||||| |||||||| ||||| || || || ||| Sbjct 844 AATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGT 785 Query 1856 CCTAGGACTCAAGTCCAGATGGCCACATAGGTAGTTATGTGGACCCAATGACCTAGCCCA 1915 | | | | || |||| | || || |||||| ||||| || ||||| | |||||| Sbjct 784 TTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq3283 Length=49157 Score = 84.2 bits (92), Expect = 4e-13 Identities = 164/240 (68%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 1683 GGCCCAGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCG 1742 || ||||||||||| || | |||| | || ||||| |||||||||||||| || || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1743 TATTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTGA-AGTGCT---- 1797 || || | ||| ||||| | | ||| || || | ||||| |||| | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCTT 2165 Query 1798 --TTAGGTAGTGGGGATCTACGTCATCAATGACGTTGTACCACGCGTCGTTGCTGTAGAC 1855 ||| || | ||| ||||| || |||||||| ||||| || || || ||| Sbjct 2164 AATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGT 2105 Query 1856 CCTAGGACTCAAGTCCAGATGGCCACATAGGTAGTTATGTGGACCCAATGACCTAGCCCA 1915 | | | | || |||| | || || |||||| ||||| || ||||| | |||||| Sbjct 2104 TTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 131/187 (70%), Gaps = 8/187 (4%) Strand=Plus/Minus Query 1667 TTTATAGCTGGAATTGGGCCCAGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAAT 1726 ||||||| ||| || ||||||||||| || | |||| | | ||||| | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1727 TTGAACCGGCTTTCCGTATTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTC 1786 |||||| || |||||||| || | ||| ||||||| | ||| || || | ||||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACT- 268 Query 1787 CTTGA-AGTGCT------TTAGGTAGTGGGGATCTACGTCATCAATGACGTTGTACCACG 1839 |||| | |||| ||| || | ||| | |||||| |||||||| ||||| | Sbjct 267 GTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATG 208 Query 1840 CGTCGTT 1846 | || || Sbjct 207 CATCATT 201 >seq4104 Length=64936 Score = 77.0 bits (84), Expect = 6e-11 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 1661 GAACTCTTTATAGCTGGAATTGGGCCCAGGATTGCAGAGGAAGATAGTGGGTATCCCACC 1720 |||| ||||||| ||| ||| ||||||||||| || | |||| | || ||||| || Sbjct 20852 GAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCC 20793 Query 1721 TTTAATTTGAACCGGCTTTCCGTATTT 1747 |||||||||||| || |||||||| || Sbjct 20792 TTTAATTTGAACTGGTTTTCCGTACTT 20766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8634979479490