Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_025964.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq5745 107 3e-20 seq3283 105 1e-19 seq77518 96.9 6e-17 seq22495 96.9 6e-17 seq33 96.9 6e-17 seq1993 95.1 2e-16 seq3439 91.5 3e-15 seq4104 86.0 1e-13 seq442 86.0 1e-13 seq30129 84.2 4e-13 seq5493 80.6 5e-12 seq54129 78.8 2e-11 seq6801 78.8 2e-11 seq3059 78.8 2e-11 seq35612 77.0 6e-11 >seq5745 Length=45059 Score = 107 bits (118), Expect = 3e-20 Identities = 127/172 (74%), Gaps = 14/172 (8%) Strand=Plus/Plus Query 1692 CCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCGTA 1751 |||||||||||| | | |||| ||||| |||||||||||||||||||| || ||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1752 CTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAGTGCTTTAGG 1809 ||||| |||||| ||||| | | ||| || || ||||||| || ||| || |||| Sbjct 43600 CTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1810 TA--------GTGGGGATCAACGTCATCAATGACGTTGTACCAGGCCTCATT 1853 || | ||||| ||||||||||||||| ||||| || || || Sbjct 43660 TAAATAAGCTGGAGGGAT----GTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 125/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1690 GGCCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCG 1749 || ||||||||||| || | |||| | ||||| || ||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1750 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1804 ||||||| ||| | ||||| | | || || || | ||||| || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1805 -TTAGGTAGTGGGGATCAACGTCATCAATGACGTTGTACCAGGCCTCATT 1853 ||| || | ||| ||||| || |||||||| ||||| || ||||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq77518 Length=14724 Score = 96.9 bits (106), Expect = 6e-17 Identities = 122/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1692 CCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCGTA 1751 |||||||||||| || | |||| ||||| || |||||||||||||||| || |||| Sbjct 2401 CCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTA 2342 Query 1752 CTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT------T 1805 ||||| |||||| || |||| | ||| || || | ||||| || | | |||| | Sbjct 2341 CTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1806 TAGGTAGTGGGGATCAACGTCATCAATGACGTTGTACCAGGCCTCATT 1853 || || ||| || |||||||||||||| ||||| || || || Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1690 GGCCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCG 1749 || ||||||||||| || | |||| | |||| || | ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1750 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1804 ||||||| ||| | ||||||| | || || || | ||||| || | | |||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1805 -TTAGGTAGTGGGGATCAACGTCATCAATGACGTTGTACCAGGCCTCATT 1853 ||| || | ||| | |||||| |||||||| ||||| || ||||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq33 Length=454124 Score = 96.9 bits (106), Expect = 6e-17 Identities = 122/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1692 CCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCGTA 1751 |||||||||||| || | |||| ||||| || | ||||||||||||||| || ||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1752 CTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT------T 1805 ||||| |||||| ||||||| | || | || | ||||| || | | || | | Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1806 TAGGTAGTGGGGATCAACGTCATCAATGACGTTGTACCAGGCCTCATT 1853 || || ||| ||||||||||||||||| ||||| || || || Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq1993 Length=81530 Score = 95.1 bits (104), Expect = 2e-16 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 1692 CCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCGTA 1751 |||||||||||| || | |||| ||||| || |||||||||||||||| || ||||| Sbjct 74404 CCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTA 74345 Query 1752 CTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT------T 1805 ||||| |||||| ||||| | | ||| || | | ||||| || | | || | | Sbjct 74344 CTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAAT 74285 Query 1806 TAGGTAGTGGGGATCAACGTCATCAATGACGTTGTACCAGGC 1847 || || ||| ||||||||||||||||| ||||| || Sbjct 74284 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGC 74243 >seq3439 Length=62978 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1690 GGCCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCG 1749 || ||| ||||||| || | |||| | ||||| || ||||||||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1750 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1804 ||||||| || | ||||| | | || || || | ||||| || | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1805 -TTAGGTAGTGGGGATCAACGTCATCAATGACGTTGTACCAGGCCTCATT 1853 ||| || | ||| || ||||| |||||||| ||||| || ||||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq4104 Length=64936 Score = 86.0 bits (94), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 1617 TGCATTTTTTAGTGCCCAGGCTTTC-AATGCGCTATTCTTCTCCTCGTCCAGGTACTCCT 1675 |||||||| ||| | ||| | |||| ||| | ||| |||| |||| | || | Sbjct 20903 TGCATTTTGTAGAGTCCAAGTTTTCCAATATGA-ATTGGACTCCAAATCCAAGAACGTTT 20845 Query 1676 TATAGCTGGAATTGGGCCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTT 1735 ||||| ||| ||| ||||||||||| || | |||| | ||||| || |||||||||| Sbjct 20844 TATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTT 20785 Query 1736 GAACTGGCTTCCCGTACTTTGTAT 1759 ||||||| || |||||||||| || Sbjct 20784 GAACTGGTTTTCCGTACTTTGCAT 20761 >seq442 Length=237535 Score = 86.0 bits (94), Expect = 1e-13 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1685 AATTGGGCCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCT 1744 |||| || ||||||||||| || |||| | ||||| | |||||||||||||||| | Sbjct 22773 AATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAACTGATT 22832 Query 1745 TCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT 1804 | |||||||||| ||| | ||| ||| | ||| || || | ||||| || | | |||| Sbjct 22833 TTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTTAATAATGCT 22892 Query 1805 TT 1806 || Sbjct 22893 TT 22894 >seq30129 Length=3650 Score = 84.2 bits (92), Expect = 4e-13 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1690 GGCCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCG 1749 || ||||||||||| || | |||| | ||||| || ||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1750 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTT 1805 ||||||| ||| | ||||| | | || || || | ||||| || | | ||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 >seq5493 Length=32325 Score = 80.6 bits (88), Expect = 5e-12 Identities = 101/133 (76%), Gaps = 7/133 (5%) Strand=Plus/Minus Query 1720 ATACCACCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGG 1779 || |||| ||||||||||||||| || |||||||| |||||||||||||| ||| Sbjct 31535 ATTCCACTTTTAATTTGAACTGGTTTACCGTACTTCACATTTGATTGCCAGTTGTATTGA 31476 Query 1780 GCCCCCATGAACTCTTTAAAG-TGCTTT--AGGTA-GT-GGGGATCAACGTCATCAATGA 1834 | || | | |||||| || | |||| || || || || ||| ||||||||||||| Sbjct 31475 GACCTAAGTAGCTCTTTCCAGCTTCTTTGCAGATATGTCGGTGAT--ACGTCATCAATGA 31418 Query 1835 CGTTGTACCAGGC 1847 ||||||||| || Sbjct 31417 TGTTGTACCATGC 31405 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 119/170 (70%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1690 GGCCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCG 1749 || ||||||||||| || | |||| | ||||| || ||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1750 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1804 ||||||| ||| | || |||| || || || | ||||| || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1805 -TTAGGTAGTGGGGATCAACGTCATCAATGACGTTGTACCAGGCCTCATT 1853 ||| || | ||| || || || |||||||| ||||| | ||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq6801 Length=49729 Score = 78.8 bits (86), Expect = 2e-11 Identities = 86/112 (77%), Gaps = 3/112 (3%) Strand=Plus/Plus Query 1663 TCCAGGTACTCCTTATAGCTGGAAT-TGGGCCC--AGGATTGCAGAGGAAGATAGTGGGA 1719 |||| | || | |||||| ||| ||| ||| |||| |||| || | |||| ||| Sbjct 47061 TCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGGA 47120 Query 1720 ATACCACCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGT 1771 || || ||||||||||||||||| || |||||||||| |||||| ||| ||| Sbjct 47121 ATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1690 GGCCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCG 1749 || ||||||||||| || | |||| | ||||| || ||||||||||||| ||| || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1750 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTT 1805 || |||| ||| | | ||||| | || || || | ||||| || | | ||||| Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTT 20304 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1690 GGCCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCG 1749 || ||||||||||| || | |||| | ||||| || ||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1750 TACTTTGTATTTGATTGCCA 1769 ||||||| || | ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8689327739820