Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_026760.1 Length=2932 Score E Sequences producing significant alignments: (Bits) Value seq3283 102 2e-18 seq490 87.8 3e-14 >seq3283 Length=49157 Score = 102 bits (112), Expect = 2e-18 Identities = 237/356 (67%), Gaps = 10/356 (3%) Strand=Plus/Minus Query 1795 GCATTTCCTAAAGCCCAATTTTTCAAATTTGAATTCTTCTCTTCGTCCAACCACTCTTTA 1854 |||||| || || |||| ||||| ||| |||||| ||| ||||| || |||| Sbjct 2355 GCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAACGTTTTA 2296 Query 1855 TAACTGCTTGT--AGGCCCAGGATTGCAGAGGAAGATTGTTGGTATGCCCCCTTTAACAA 1912 || | ||| ||| ||||||||||| || | ||| |||| || || ||||||| Sbjct 2295 TAG--GATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTT 2238 Query 1913 GTAGTGGCTTTCCATACTTCGTATTGCTTTGCCAGTCTCTCTGGGACCCACAGAACTCTT 1972 | | ||| || || ||||| | |||| ||||| | || ||| | || ||||| || Sbjct 2237 GAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTT 2178 Query 1973 TAAAGTGCTTC------AGATAATGCGGATCGACGTCATCAATGACGTTGTATAACGCAT 2026 | | |||||| | ||||| |||| |||||| || |||||||| || | |||| Sbjct 2177 GATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCAT 2118 Query 2027 CATTGCTAAACACCTTGGGAGAGAGATCAAGATGTCCACATAAGTAATTATGTGGTCCTA 2086 |||| || |||| | | ||| | | ||| || ||| || ||||| |||| Sbjct 2117 CATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTA 2058 Query 2087 AGCTTCTGGCCCACTCAGTTTTTCCAGTTCTTGTTTCTCCCTCAATAAAAATACTC 2142 | | ||||| | ||||| || |||||| | || ||||||| ||| ||| Sbjct 2057 ATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTC 2002 >seq490 Length=137872 Score = 87.8 bits (96), Expect = 3e-14 Identities = 172/246 (70%), Gaps = 10/246 (4%) Strand=Plus/Minus Query 1875 ATTGCAGAGGAAGATTGTTGGTATGCCCCCTTTAACAAGTAGTGGCTTTCCATACTTCGT 1934 |||||| |||| |||| |||||| || ||||||| ||| |||||| |||| || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1935 ATTGCTTTGCCAGTCTCT-CTGGGACCCACAGAACTCTTTAAAGTGCTTC----AGATA- 1988 || ||||||| || | || || |||| | ||| | | |||||| ||| | Sbjct 70558 ATCAGCTTGCCAG-CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAG 70500 Query 1989 ATGC-GGATCGACGTCATCAATGACGTTGTATAACGCATCATTGCTAAACACCTTGGGAG 2047 |||| ||| ||||||||| |||||||| || | | |||||| ||| ||| | Sbjct 70499 ATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCTTTCTAT 70440 Query 2048 AGAGATCAAGATGTCCACATAA-GTAATTATGTGGTCCTAAGCTTCTGGCCCACTCAGTT 2106 || ||| | | || ||||| |||||||||||| || || ||||| ||||| ||||| Sbjct 70439 TGAAATCCATAACGCC-CATAAAGTAATTATGTGGACCCAAACTTCTAGCCCATTCAGTC 70381 Query 2107 TTTCCA 2112 || ||| Sbjct 70380 TTCCCA 70375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9261323626575