Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_026761.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq3283 125 1e-25 seq3439 116 6e-23 seq22495 114 2e-22 seq77518 96.9 6e-17 seq35612 96.9 6e-17 seq30129 96.9 6e-17 seq4104 96.9 6e-17 seq442 95.1 2e-16 seq5745 93.3 7e-16 seq3059 91.5 3e-15 seq80468 89.7 9e-15 seq33 89.7 9e-15 seq953 87.8 3e-14 seq54129 82.4 1e-12 seq6801 80.6 5e-12 seq1993 80.6 5e-12 seq27608 77.0 6e-11 >seq3283 Length=49157 Score = 125 bits (138), Expect = 1e-25 Identities = 190/269 (71%), Gaps = 10/269 (4%) Strand=Plus/Minus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 |||||||||| |||||| | || |||||| |||||||| || | |||| | ||||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTGGGC 1772 |||||||||||||||||||| || |||||||| | ||| | ||||| | | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1773 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGAGGATCTACGTCATCGATGAT 1826 || | ||| | | | | |||| ||| || | ||| ||||| ||||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1827 GTTATACCACGCATCATTGCTGTAAACTTTGGGGCTTAGATC--TAAATGACCACATAGG 1884 ||||||||| |||||||| ||| ||||| | | ||| ||||| || || | Sbjct 2131 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAAT--CCCATTATG 2074 Query 1885 TAATTATGAGGCCCTAATGACCTAGCCCA 1913 || || || || |||||||| | |||||| Sbjct 2073 TAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq3439 Length=62978 Score = 116 bits (128), Expect = 6e-23 Identities = 188/269 (70%), Gaps = 10/269 (4%) Strand=Plus/Minus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 ||| |||||| |||||| | | | |||||| ||||||| || | |||| | ||||| Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTGGGC 1772 |||||||||||||||||||| ||||||||||| | || | ||||| | | || || Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1773 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGAGGATCTACGTCATCGATGAT 1826 || | ||| | | | | |||| ||| || | ||| || |||||||||| Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1827 GTTATACCACGCATCATTGCTGTAAACTTTGGGGCTTAGATC--TAAATGACCACATAGG 1884 ||||||||| |||||||| ||| ||||| | | ||| ||||| || || | Sbjct 811 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAAT--CCCATTATG 754 Query 1885 TAATTATGAGGCCCTAATGACCTAGCCCA 1913 || || || || |||||||| | |||||| Sbjct 753 TAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq22495 Length=567 Score = 114 bits (126), Expect = 2e-22 Identities = 180/258 (70%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 ||| ||||| |||||| | ||| |||||| |||||||| || | |||| | |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTGGGC 1772 |||| ||||||||||||||| ||||||||||| | ||| | ||||||| | || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1773 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGAGGATCTACGTCATCGATGAT 1826 || | ||| | | | | |||| ||| || | ||| | ||||||||||| Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1827 GTTATACCACGCATCATTGCTGTAAACTTTGGGGCTTAGATCTAAATGACCACATAGGTA 1886 ||||||||| |||||||| ||| ||||| | | ||| ||| || || ||| Sbjct 218 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTA 159 Query 1887 ATTATGAGGCCCTAATGA 1904 || || || |||||||| Sbjct 158 GTTGTGTGGGCCTAATGA 141 >seq77518 Length=14724 Score = 96.9 bits (106), Expect = 6e-17 Identities = 142/201 (71%), Gaps = 9/201 (4%) Strand=Plus/Minus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1709 ||||||||| |||||||| | ||| || || |||||||| || | |||| || Sbjct 2434 ATCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGG 2375 Query 1710 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTG 1769 ||| ||||||||||||||||||| ||| ||||||| | |||||| || |||| | ||| Sbjct 2374 AATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTG 2315 Query 1770 GGCCCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGAGGATCTACGTCATCGAT 1823 || || | ||| | | | | |||| ||| || ||| || ||||| || Sbjct 2314 TGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAAT 2255 Query 1824 GATGTTATACCACGCATCATT 1844 || |||||||||||| || || Sbjct 2254 GACGTTATACCACGCGTCGTT 2234 >seq35612 Length=1588 Score = 96.9 bits (106), Expect = 6e-17 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 ||||||||| |||||| | ||| |||||| |||||||| || | |||| | ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTT 1745 |||||||||||||||||||| ||||||||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTT 1571 >seq30129 Length=3650 Score = 96.9 bits (106), Expect = 6e-17 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 |||||||||| ||| || | ||| |||||| |||||||| || | |||| | ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCA 1760 |||||||||||||||||| | ||||||||||| | ||| | ||||| Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCA 2450 >seq4104 Length=64936 Score = 96.9 bits (106), Expect = 6e-17 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 |||||||||| |||||| | ||| ||||| |||||||| || | |||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTT 1745 |||||||||||||||||||| ||||||||||| Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq442 Length=237535 Score = 95.1 bits (104), Expect = 2e-16 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 ||||||||| |||||| | |||||||||| |||||||| || |||| | ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTGGGC 1772 |||||||||||||||||| ||||||||||| | ||| | ||| ||| | ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1773 CCCCATGAATTCCTTAAAGTGCTTT 1797 || | ||| | | | | |||||| Sbjct 22870 GCCTACGAACTGTTAATAATGCTTT 22894 >seq5745 Length=45059 Score = 93.3 bits (102), Expect = 7e-16 Identities = 193/283 (68%), Gaps = 11/283 (4%) Strand=Plus/Plus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1709 ||| |||||| |||||||| | ||| || || |||||||| | | |||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1710 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTG 1769 ||| || ||||||||||||||||| || |||||||| | |||||| ||||| | | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1770 GGCCCCCATGAATTCCT--TAAAGTGCTTTAGGTAGTGA----GGATCTACGTCATCGAT 1823 || || ||||| | | ||| || |||| || | ||| | |||||| || Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAAT 43686 Query 1824 GATGTTATACCACGCATCATTGCTGTAAACTTTGGGGCTTAGATCTA-AATGACCACATA 1882 || ||||||||| || || || || ||| | | | ||| | || | ||| || Sbjct 43687 GACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCA-TTA 43745 Query 1883 GGTAATTATGAGGCCCTAATGACCTAGCCCACATCGTTTTACC 1925 |||||||| || || || || | ||||| | |||||||| Sbjct 43746 TATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq3059 Length=182465 Score = 91.5 bits (100), Expect = 3e-15 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 |||||||||| ||||| | ||| |||||| |||||||| || | |||| | ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCAGT 1762 |||||||||||||||| ||| |||||||| || | ||| | | ||||| Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGT 20338 >seq80468 Length=4946 Score = 89.7 bits (98), Expect = 9e-15 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 || |||||| |||||| | ||| |||||| ||||||| || | |||| | ||||| Sbjct 4238 ATTCAAGAATGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 4297 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTGGTATT 1751 |||||||||||| ||||| || ||||||||||| ||||| Sbjct 4298 TCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTGTATT 4336 >seq33 Length=454124 Score = 89.7 bits (98), Expect = 9e-15 Identities = 140/200 (70%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCT--GGATTGCAGAGGAAGATAGTGGGA 1710 ||| |||||| |||||||| | | || || |||||||| || | |||| ||| Sbjct 403335 ATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGA 403276 Query 1711 ATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTGG 1770 || |||| ||||||||||||||| ||||||||||| | |||||| ||||||| | || Sbjct 403275 ATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGT 403216 Query 1771 GCCCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGAGGATCTACGTCATCGATG 1824 | || | ||| | | | | || | ||| || ||| |||||||| ||| Sbjct 403215 ACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATG 403156 Query 1825 ATGTTATACCACGCATCATT 1844 | |||||||||||| || || Sbjct 403155 ACGTTATACCACGCGTCGTT 403136 >seq953 Length=224861 Score = 87.8 bits (96), Expect = 3e-14 Identities = 183/270 (68%), Gaps = 12/270 (4%) Strand=Plus/Plus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 ||| ||||| |||||| | ||| |||||| |||||||| | | |||| | ||||| Sbjct 1812 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAAT 1871 Query 1713 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTGGGC 1772 |||||||||||||||| || ||||||||||| | ||| ||||| | | || | Sbjct 1872 CCCGCCTTTAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTAC 1931 Query 1773 CCCCATGAATTCCTTAAAGTGCT------TTAGGTAGTGAGGATCTACGTCATCGATGAT 1826 || | ||| | | | | | || ||| || | ||| ||||| ||||| | Sbjct 1932 GCCTACGAACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAAC 1991 Query 1827 GTTATACCACGCATCATTGCTGTAAACTTTGGGGCTTAGATC--TAAATGACCACA-TAG 1883 ||||||||| |||||||| ||| ||| | | | ||| ||||| | || || Sbjct 1992 GTTATACCATGCATCATTTGAGTACGTTTTCGAATTAAAATCCATAAAT---CTCATTAT 2048 Query 1884 GTAATTATGAGGCCCTAATGACCTAGCCCA 1913 ||| || || || |||||||| | |||||| Sbjct 2049 GTAGTTGTGTGGGCCTAATGAACGAGCCCA 2078 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1681 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCG 1740 ||||| |||||||| || | |||| | ||||| |||||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1741 TACTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1795 ||||| | ||| | || |||| || || || | ||| | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1796 -TTAGGTAGTGAGGATCTACGTCATCGATGATGTTATACCACGCATCATT 1844 ||| || | ||| || || ||||||| ||||||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq6801 Length=49729 Score = 80.6 bits (88), Expect = 5e-12 Identities = 86/113 (76%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1709 |||||||||| ||||||| ||| || || ||| |||| || | |||| || Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119 Query 1710 AATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCAGT 1762 ||| |||||||||||||||||||| || |||||||| | |||||| ||| ||| Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 >seq1993 Length=81530 Score = 80.6 bits (88), Expect = 5e-12 Identities = 114/161 (71%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1684 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTAC 1743 || |||||||| || | |||| ||||| ||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1744 TTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1797 || | |||||| ||||| | | ||| || | | ||| | | | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1798 AGGTAGTGAGGATCTACGTCATCGATGATGTTATACCACGC 1838 | || ||| |||||||| |||| |||||||||||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGC 74243 >seq27608 Length=1821 Score = 77.0 bits (84), Expect = 6e-11 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1653 ATCCAAGAACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1712 |||||||||| |||||| | ||| |||||| |||||||| || | |||| | ||||| Sbjct 1745 ATCCAAGAACGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1804 Query 1713 TCCGCCTTTAATTTGAA 1729 |||||||||||||||| Sbjct 1805 CCCGCCTTTAATTTGAA 1821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8702115565780